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comparison ESSAISENCOURS.txt @ 13:13296d4a29cf draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
author siwaa
date Mon, 10 Jun 2024 09:58:18 +0000
parents 614bed83ba5d
children e7772bdae78d
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12:614bed83ba5d 13:13296d4a29cf
20 #------------------------------------------------------------------------------ 20 #------------------------------------------------------------------------------
21 21
22 gama.def: 22 gama.def:
23 + chmod -R 777 /opt 23 + chmod -R 777 /opt
24 24
25 <tool id="gama_tool" name="gama" version="1.0.0k"> 25 <tool id="gama_tool" name="gama" version="1.0.0k"> idem l
26 registry.forgemia.inra.fr/nathalie.rousse/use/gama:3fd4fb4b90db353af9bac01b99ee3b63220274c3 26 registry.forgemia.inra.fr/nathalie.rousse/use/gama:3fd4fb4b90db353af9bac01b99ee3b63220274c3
27
28 Singularity> echo $JAVA_HOME
29 /opt/openjdk-17
30 Singularity> which java
31 /opt/openjdk-17/bin/java
32 Singularity> java -version
33 openjdk version "17-ea" 2021-09-14
34 OpenJDK Runtime Environment (build 17-ea+14)
35 OpenJDK 64-Bit Server VM (build 17-ea+14, mixed mode, sharing)
36
37 vim MY_gama-headless.sh :
38 #lun10juin
39 MY_JAVA_DIR=./_java
40 mkdir -p ./_java/.systemPrefs
41 mkdir -p ./_java/.userPrefs
42 #chmod -R 755 ./_java
43 chmod -R 777 ./_java
44 export JAVA_OPTS="-Djava.util.prefs.systemRoot=./_java -Djava.util.prefs.userRoot=./_java/.userPrefs"
45
46
47
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50
51 mkdir -p ~/.java/.systemPrefs
52 mkdir ~/.java/.userPrefs
53 chmod -R 755 ~/.java
54 export JAVA_OPTS="-Djava.util.prefs.systemRoot=/home/user/.java -Djava.util.prefs.userRoot=/home/user/.java/.userPrefs"
55 <run appl>
56