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comparison gama_tool.xml @ 17:5a94c8c7c8cc draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
author siwaa
date Mon, 10 Jun 2024 12:22:11 +0000
parents 4117e2f0a591
children 855883e4a317
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16:4117e2f0a591 17:5a94c8c7c8cc
1 <tool id="gama_tool" name="gama" version="1.0.0o"> 1 <tool id="gama_tool" name="gama" version="1.0.0p">
2 2
3 <description>tool for GAMA Platform</description> 3 <description>tool for GAMA Platform</description>
4 4
5 <requirements> 5 <requirements>
6 6
12 </requirements> 12 </requirements>
13 13
14 <command detect_errors="aggressive"> 14 <command detect_errors="aggressive">
15 <![CDATA[ 15 <![CDATA[
16 cp -fr /opt/gama-platform .; 16 cp -fr /opt/gama-platform .;
17 chmod -R 777 gama-platform;
17 cp $__tool_directory__/src/MY_predatorPrey.gaml gama-platform/headless/samples/predatorPrey/.; 18 cp $__tool_directory__/src/MY_predatorPrey.gaml gama-platform/headless/samples/predatorPrey/.;
18 cp $__tool_directory__/src/MY_gama-headless.sh gama-platform/headless/.; 19 cp $__tool_directory__/src/MY_gama-headless.sh gama-platform/headless/.;
19 cp $__tool_directory__/src/MY_sequential_example.py .; 20 cp $__tool_directory__/src/MY_sequential_example.py .;
20 cp $__tool_directory__/src/cmd_gama_headless.sh .; 21 cp $__tool_directory__/src/cmd_gama_headless.sh .;
21 cp $__tool_directory__/src/cmd_python_client.sh .; 22 cp $__tool_directory__/src/cmd_python_client.sh .;
22 /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 400 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt; 23 /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 600 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;
23 cp run_server.txt ${run_server_txt}; 24 cp run_server.txt ${run_server_txt};
24 cp run_client.txt ${run_client_txt}; 25 cp run_client.txt ${run_client_txt};
25 cp gama-platform/headless/samples/predatorPrey/results.txt ${results_txt}; 26 cp gama-platform/headless/samples/predatorPrey/results.txt ${results_txt};
26 ]]> 27 ]]>
27 </command> 28 </command>