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diff gama_tool.xml @ 17:5a94c8c7c8cc draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
author siwaa
date Mon, 10 Jun 2024 12:22:11 +0000
parents 4117e2f0a591
children 855883e4a317
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line diff
--- a/gama_tool.xml	Mon Jun 10 12:02:59 2024 +0000
+++ b/gama_tool.xml	Mon Jun 10 12:22:11 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="gama_tool" name="gama" version="1.0.0o">
+<tool id="gama_tool" name="gama" version="1.0.0p">
 
   <description>tool for GAMA Platform</description>
 
@@ -14,12 +14,13 @@
   <command detect_errors="aggressive">
     <![CDATA[
     cp -fr /opt/gama-platform .;
+    chmod -R 777 gama-platform;
     cp $__tool_directory__/src/MY_predatorPrey.gaml gama-platform/headless/samples/predatorPrey/.;
     cp $__tool_directory__/src/MY_gama-headless.sh gama-platform/headless/.;
     cp $__tool_directory__/src/MY_sequential_example.py .;
     cp $__tool_directory__/src/cmd_gama_headless.sh .;
     cp $__tool_directory__/src/cmd_python_client.sh .;
-    /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 400 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;
+    /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 600 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;
     cp run_server.txt ${run_server_txt};
     cp run_client.txt ${run_client_txt};
     cp gama-platform/headless/samples/predatorPrey/results.txt ${results_txt};