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comparison ESSAISENCOURS.txt @ 14:e7772bdae78d draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
author siwaa
date Mon, 10 Jun 2024 10:15:22 +0000
parents 13296d4a29cf
children 5667e00be2aa
comparison
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13:13296d4a29cf 14:e7772bdae78d
20 #------------------------------------------------------------------------------ 20 #------------------------------------------------------------------------------
21 21
22 gama.def: 22 gama.def:
23 + chmod -R 777 /opt 23 + chmod -R 777 /opt
24 24
25 <tool id="gama_tool" name="gama" version="1.0.0k"> idem l 25 <tool id="gama_tool" name="gama" version="1.0.0m">
26 registry.forgemia.inra.fr/nathalie.rousse/use/gama:3fd4fb4b90db353af9bac01b99ee3b63220274c3 26
27 registry.forgemia.inra.fr/nathalie.rousse/use/gama:3fd4fb4b90db353af9bac01b99ee3b63220274c3
28
29 /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 600 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;
27 30
28 Singularity> echo $JAVA_HOME 31 Singularity> echo $JAVA_HOME
29 /opt/openjdk-17 32 /opt/openjdk-17
30 Singularity> which java 33 Singularity> which java
31 /opt/openjdk-17/bin/java 34 /opt/openjdk-17/bin/java
42 #chmod -R 755 ./_java 45 #chmod -R 755 ./_java
43 chmod -R 777 ./_java 46 chmod -R 777 ./_java
44 export JAVA_OPTS="-Djava.util.prefs.systemRoot=./_java -Djava.util.prefs.userRoot=./_java/.userPrefs" 47 export JAVA_OPTS="-Djava.util.prefs.systemRoot=./_java -Djava.util.prefs.userRoot=./_java/.userPrefs"
45 48
46 49
50 SOURCES
51 mkdir -p ~/.java/.systemPrefs
52 mkdir ~/.java/.userPrefs
53 chmod -R 755 ~/.java
54 export JAVA_OPTS="-Djava.util.prefs.systemRoot=/home/user/.java -Djava.util.prefs.userRoot=/home/user/.java/.userPrefs"
55 SOURCE AUTRE
56 ./jmeter -Djava.util.prefs.systemRoot=/home/youruser/.jmeter -Djava.util.prefs.userRoot=/home/youruser/.jmeter/.userPrefs
47 57
48
49
50
51 mkdir -p ~/.java/.systemPrefs
52 mkdir ~/.java/.userPrefs
53 chmod -R 755 ~/.java
54 export JAVA_OPTS="-Djava.util.prefs.systemRoot=/home/user/.java -Djava.util.prefs.userRoot=/home/user/.java/.userPrefs"
55 <run appl>
56