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changeset 14:e7772bdae78d draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
author siwaa
date Mon, 10 Jun 2024 10:15:22 +0000
parents 13296d4a29cf
children 5667e00be2aa
files ESSAISENCOURS.txt gama_tool.xml
diffstat 2 files changed, 14 insertions(+), 13 deletions(-) [+]
line wrap: on
line diff
--- a/ESSAISENCOURS.txt	Mon Jun 10 09:58:18 2024 +0000
+++ b/ESSAISENCOURS.txt	Mon Jun 10 10:15:22 2024 +0000
@@ -22,8 +22,11 @@
 gama.def:
 +  chmod -R 777 /opt
 
-<tool id="gama_tool" name="gama" version="1.0.0k"> idem l
-registry.forgemia.inra.fr/nathalie.rousse/use/gama:3fd4fb4b90db353af9bac01b99ee3b63220274c3
+<tool id="gama_tool" name="gama" version="1.0.0m">
+
+    registry.forgemia.inra.fr/nathalie.rousse/use/gama:3fd4fb4b90db353af9bac01b99ee3b63220274c3
+
+    /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 600 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;
 
 Singularity> echo $JAVA_HOME
 /opt/openjdk-17
@@ -44,13 +47,11 @@
 export JAVA_OPTS="-Djava.util.prefs.systemRoot=./_java -Djava.util.prefs.userRoot=./_java/.userPrefs"
 
 
-
-
-
+        SOURCES
+        mkdir -p ~/.java/.systemPrefs
+        mkdir ~/.java/.userPrefs
+        chmod -R 755 ~/.java
+        export JAVA_OPTS="-Djava.util.prefs.systemRoot=/home/user/.java -Djava.util.prefs.userRoot=/home/user/.java/.userPrefs"
+        SOURCE AUTRE
+        ./jmeter -Djava.util.prefs.systemRoot=/home/youruser/.jmeter -Djava.util.prefs.userRoot=/home/youruser/.jmeter/.userPrefs
 
-mkdir -p ~/.java/.systemPrefs
-mkdir ~/.java/.userPrefs
-chmod -R 755 ~/.java
-export JAVA_OPTS="-Djava.util.prefs.systemRoot=/home/user/.java -Djava.util.prefs.userRoot=/home/user/.java/.userPrefs"
-  <run appl>
-
--- a/gama_tool.xml	Mon Jun 10 09:58:18 2024 +0000
+++ b/gama_tool.xml	Mon Jun 10 10:15:22 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="gama_tool" name="gama" version="1.0.0l">
+<tool id="gama_tool" name="gama" version="1.0.0m">
 
   <description>tool for GAMA Platform</description>
 
@@ -19,7 +19,7 @@
     cp $__tool_directory__/src/MY_sequential_example.py .;
     cp $__tool_directory__/src/cmd_gama_headless.sh .;
     cp $__tool_directory__/src/cmd_python_client.sh .;
-    /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 300 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;
+    /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 600 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;
     cp run_server.txt ${run_server_txt};
     cp run_client.txt ${run_client_txt};
     cp gama-platform/headless/samples/predatorPrey/results.txt ${results_txt};