view ESSAISENCOURS.txt @ 13:13296d4a29cf draft

planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
author siwaa
date Mon, 10 Jun 2024 09:58:18 +0000
parents 614bed83ba5d
children e7772bdae78d
line wrap: on
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#------------------------------------------------------------------------------
# ESSAIS Vendredi 7 juin
#------------------------------------------------------------------------------
<tool id="gama_tool" name="gama" version="1.0.0b">

8000 -> 6868

=> RES : tourne infini

#------------------------------------------------------------------------------
<tool id="gama_tool" name="gama" version="1.0.0j">

(ajout de traces dans TTT.txt)

-    /bin/bash cmd_gama_headless.sh > run_server.txt & sleep 20 && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;
+    /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 300 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;

#------------------------------------------------------------------------------
# ESSAIS Lundi 10 juin
#------------------------------------------------------------------------------

gama.def:
+  chmod -R 777 /opt

<tool id="gama_tool" name="gama" version="1.0.0k"> idem l
registry.forgemia.inra.fr/nathalie.rousse/use/gama:3fd4fb4b90db353af9bac01b99ee3b63220274c3

Singularity> echo $JAVA_HOME
/opt/openjdk-17
Singularity> which java
/opt/openjdk-17/bin/java
Singularity> java -version
openjdk version "17-ea" 2021-09-14
OpenJDK Runtime Environment (build 17-ea+14)
OpenJDK 64-Bit Server VM (build 17-ea+14, mixed mode, sharing)

vim MY_gama-headless.sh :
#lun10juin
MY_JAVA_DIR=./_java
mkdir -p ./_java/.systemPrefs
mkdir -p ./_java/.userPrefs
#chmod -R 755 ./_java
chmod -R 777 ./_java
export JAVA_OPTS="-Djava.util.prefs.systemRoot=./_java -Djava.util.prefs.userRoot=./_java/.userPrefs"






mkdir -p ~/.java/.systemPrefs
mkdir ~/.java/.userPrefs
chmod -R 755 ~/.java
export JAVA_OPTS="-Djava.util.prefs.systemRoot=/home/user/.java -Djava.util.prefs.userRoot=/home/user/.java/.userPrefs"
  <run appl>