Mercurial > repos > siwaa > gama
view ESSAISENCOURS.txt @ 13:13296d4a29cf draft
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
author | siwaa |
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date | Mon, 10 Jun 2024 09:58:18 +0000 |
parents | 614bed83ba5d |
children | e7772bdae78d |
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#------------------------------------------------------------------------------ # ESSAIS Vendredi 7 juin #------------------------------------------------------------------------------ <tool id="gama_tool" name="gama" version="1.0.0b"> 8000 -> 6868 => RES : tourne infini #------------------------------------------------------------------------------ <tool id="gama_tool" name="gama" version="1.0.0j"> (ajout de traces dans TTT.txt) - /bin/bash cmd_gama_headless.sh > run_server.txt & sleep 20 && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt; + /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 300 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt; #------------------------------------------------------------------------------ # ESSAIS Lundi 10 juin #------------------------------------------------------------------------------ gama.def: + chmod -R 777 /opt <tool id="gama_tool" name="gama" version="1.0.0k"> idem l registry.forgemia.inra.fr/nathalie.rousse/use/gama:3fd4fb4b90db353af9bac01b99ee3b63220274c3 Singularity> echo $JAVA_HOME /opt/openjdk-17 Singularity> which java /opt/openjdk-17/bin/java Singularity> java -version openjdk version "17-ea" 2021-09-14 OpenJDK Runtime Environment (build 17-ea+14) OpenJDK 64-Bit Server VM (build 17-ea+14, mixed mode, sharing) vim MY_gama-headless.sh : #lun10juin MY_JAVA_DIR=./_java mkdir -p ./_java/.systemPrefs mkdir -p ./_java/.userPrefs #chmod -R 755 ./_java chmod -R 777 ./_java export JAVA_OPTS="-Djava.util.prefs.systemRoot=./_java -Djava.util.prefs.userRoot=./_java/.userPrefs" mkdir -p ~/.java/.systemPrefs mkdir ~/.java/.userPrefs chmod -R 755 ~/.java export JAVA_OPTS="-Djava.util.prefs.systemRoot=/home/user/.java -Djava.util.prefs.userRoot=/home/user/.java/.userPrefs" <run appl>