Mercurial > repos > siwaa > gama
changeset 17:5a94c8c7c8cc draft
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
| author | siwaa |
|---|---|
| date | Mon, 10 Jun 2024 12:22:11 +0000 |
| parents | 4117e2f0a591 |
| children | 1437cd0df25b |
| files | ESSAISENCOURS.txt gama_tool.xml src/.MY_gama-headless.sh.swp |
| diffstat | 3 files changed, 18 insertions(+), 13 deletions(-) [+] |
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--- a/ESSAISENCOURS.txt Mon Jun 10 12:02:59 2024 +0000 +++ b/ESSAISENCOURS.txt Mon Jun 10 12:22:11 2024 +0000 @@ -22,11 +22,24 @@ gama.def: + chmod -R 777 /opt -<tool id="gama_tool" name="gama" version="1.0.0o"> +<tool id="gama_tool" name="gama" version="1.0.0p"> registry.forgemia.inra.fr/nathalie.rousse/use/gama:3fd4fb4b90db353af9bac01b99ee3b63220274c3 - /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 400 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt; + /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 600 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt; + + chmod -R 777 gama-platform; + +vim MY_gama-headless.sh : +MY_JAVA_DIR=./_java +... +echo "TRACE MY_gama-headless.sh: pwd:" +pwd; +pwd > RRR.txt + +if ! java -cp "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/../plugins/org.eclipse.equinox.launcher*.jar -Xms512m $memory -Djava.io.tmpdir=$MY_TEMP_DIR -Djava.util.prefs.systemRoot=${MY_JAVA_DIR} -Djava.util.prefs.userRoot=${MY_JAVA_USER_PREFS_DIR} -Djava.awt.headless=true org.eclipse.core.launcher.Main -configuration "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/configuration -application msi.gama.headless.product -data $passWork "$@"; then + +#------------------------------------------------------------------------------ Singularity> echo $JAVA_HOME /opt/openjdk-17 @@ -37,12 +50,3 @@ OpenJDK Runtime Environment (build 17-ea+14) OpenJDK 64-Bit Server VM (build 17-ea+14, mixed mode, sharing) -vim MY_gama-headless.sh : -MY_JAVA_DIR=./_java -... -echo "TRACE MY_gama-headless.sh: pwd:" -pwd; -pwd > RRR.txt - -if ! java -cp "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/../plugins/org.eclipse.equinox.launcher*.jar -Xms512m $memory -Djava.io.tmpdir=$MY_TEMP_DIR -Djava.util.prefs.systemRoot=${MY_JAVA_DIR} -Djava.util.prefs.userRoot=${MY_JAVA_USER_PREFS_DIR} -Djava.awt.headless=true org.eclipse.core.launcher.Main -configuration "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/configuration -application msi.gama.headless.product -data $passWork "$@"; then -
--- a/gama_tool.xml Mon Jun 10 12:02:59 2024 +0000 +++ b/gama_tool.xml Mon Jun 10 12:22:11 2024 +0000 @@ -1,4 +1,4 @@ -<tool id="gama_tool" name="gama" version="1.0.0o"> +<tool id="gama_tool" name="gama" version="1.0.0p"> <description>tool for GAMA Platform</description> @@ -14,12 +14,13 @@ <command detect_errors="aggressive"> <![CDATA[ cp -fr /opt/gama-platform .; + chmod -R 777 gama-platform; cp $__tool_directory__/src/MY_predatorPrey.gaml gama-platform/headless/samples/predatorPrey/.; cp $__tool_directory__/src/MY_gama-headless.sh gama-platform/headless/.; cp $__tool_directory__/src/MY_sequential_example.py .; cp $__tool_directory__/src/cmd_gama_headless.sh .; cp $__tool_directory__/src/cmd_python_client.sh .; - /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 400 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt; + /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 600 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt; cp run_server.txt ${run_server_txt}; cp run_client.txt ${run_client_txt}; cp gama-platform/headless/samples/predatorPrey/results.txt ${results_txt};