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comparison src/cmd_gama_headless_legacy_gen.sh @ 9:382cb366533a draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_HEADLESS_LEGACY/galaxy-tools/gama_legacy_gen commit 03175a47f53f66ed4de00e6e25cf5ff4569bac5f-dirty
author siwaa
date Tue, 10 Dec 2024 10:59:08 +0000
parents 862b156b56ce
children 770e0dde4735
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8:862b156b56ce 9:382cb366533a
25 HOME=$(echo $PWD) 25 HOME=$(echo $PWD)
26 26
27 # !!! Passage en variables d'environnement 27 # !!! Passage en variables d'environnement
28 export MY_JAVA_DIR=${HOME}/_java 28 export MY_JAVA_DIR=${HOME}/_java
29 export MY_TEMP_DIR=${HOME}/_temp_dir 29 export MY_TEMP_DIR=${HOME}/_temp_dir
30 #mkdir -p ${MY_TEMP_DIR} 30 mkdir -p ${MY_TEMP_DIR}
31 export MY_CONFIGURATION_DIR=${HOME}/configuration 31 export MY_CONFIGURATION_DIR=${HOME}/configuration
32 mkdir -p ${MY_CONFIGURATION_DIR}
32 export MY_DATA_DIR=${HOME}/_data 33 export MY_DATA_DIR=${HOME}/_data
33 #mkdir -p ${MY_DATA_DIR} 34 mkdir -p ${MY_DATA_DIR}
34 35
35 cd /opt/gama-platform/headless; 36 cd /opt/gama-platform/headless;
36 /bin/bash MY_gama-headless.sh -xml ${EXPERIMENT_NAME} ${HOME}/inputs/model.gaml ${HOME}/outputs/file.xml 37 #/bin/bash MY_gama-headless.sh -xml ${EXPERIMENT_NAME} ${HOME}/inputs/model.gaml ${HOME}/outputs/file.xml
38 /bin/bash MY_gama-headless.sh -v -xml ${EXPERIMENT_NAME} ${HOME}/inputs/model.gaml ${HOME}/outputs/file.xml