view src/cmd_gama_headless_legacy_gen.sh @ 9:382cb366533a draft

planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_HEADLESS_LEGACY/galaxy-tools/gama_legacy_gen commit 03175a47f53f66ed4de00e6e25cf5ff4569bac5f-dirty
author siwaa
date Tue, 10 Dec 2024 10:59:08 +0000
parents 862b156b56ce
children 770e0dde4735
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#!/bin/bash

# Headless Legacy mode.
#
# Command to generate a XML file corresponding to an existing experiment :
#. ./gama-headless.sh -xml experimentName /path/to/inputFile.gaml /path/to/outputFile.xml
# with:
# -  -xml: flag asking the headless to generate a XML file well-formatted
#    for our experiment.
# -  experimentName: name of the experiment to run in headless.
#    Important : experiment of 'type': 'gui'.
# -  /path/to/inputFile.gaml: path (relative or absolute) to GAML file
#    containing the experiment to run.
# -  /path/to/outputFile.xml: path (relative or absolute) to the
#    generated XML file.
#
# With :
# - GAMA application in folder ./software
# - GAML file (containing the experiment to run) path : ./inputs/model.gaml
# - Generated XML file path : ./outputs/file.xml

EXPERIMENT_NAME=$1
#EXPERIMENT_NAME="prey_predator"

HOME=$(echo $PWD)

# !!! Passage en variables d'environnement
export MY_JAVA_DIR=${HOME}/_java
export MY_TEMP_DIR=${HOME}/_temp_dir
mkdir -p ${MY_TEMP_DIR}
export MY_CONFIGURATION_DIR=${HOME}/configuration
mkdir -p ${MY_CONFIGURATION_DIR}
export MY_DATA_DIR=${HOME}/_data
mkdir -p ${MY_DATA_DIR}

cd /opt/gama-platform/headless;
#/bin/bash MY_gama-headless.sh -xml ${EXPERIMENT_NAME} ${HOME}/inputs/model.gaml ${HOME}/outputs/file.xml
/bin/bash MY_gama-headless.sh -v -xml ${EXPERIMENT_NAME} ${HOME}/inputs/model.gaml ${HOME}/outputs/file.xml