Mercurial > repos > siwaa > gama_legacy_gen

comparison gama_legacy_gen.xml @ 2:470b8ed4ce1a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_HEADLESS_LEGACY/galaxy-tools/gama_legacy_gen commit f3324742c1aa0050df56ad3f868018360a10a6ab-dirty
author siwaa
date Mon, 09 Dec 2024 16:58:58 +0000
parents 05a4aedfa923
children 4f6c9c14b8e4
comparison
equal deleted inserted replaced
1:05a4aedfa923 2:470b8ed4ce1a
11 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_gama/use/GAMA_HEADLESS_LEGACY/containers/gama_headless.simg</container --> 11 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_gama/use/GAMA_HEADLESS_LEGACY/containers/gama_headless.simg</container -->
12 </requirements> 12 </requirements>
13 13
14 <command detect_errors="aggressive"> 14 <command detect_errors="aggressive">
15 <![CDATA[ 15 <![CDATA[
16 mkdir -p software; mkdir -p inputs; mkdir -p outputs; 16 mkdir -p inputs; mkdir -p outputs;
17 cp $__tool_directory__/src/MY_gama-headless.sh .;
18 cp $__tool_directory__/src/cmd_gama_headless_legacy_gen.sh .; 17 cp $__tool_directory__/src/cmd_gama_headless_legacy_gen.sh .;
19 cp ${model_gaml} inputs/model.gaml; 18 cp ${model_gaml} inputs/model.gaml;
20 cp -fr /opt/gama-platform software/.;
21 cp MY_gama-headless.sh software/gama-platform/headless/. ;
22 chmod -R 777 software;
23 /bin/bash cmd_gama_headless_legacy_gen.sh ${experiment_name} > outputs/GEN.txt; 19 /bin/bash cmd_gama_headless_legacy_gen.sh ${experiment_name} > outputs/GEN.txt;
24 xmlstarlet edit --inplace --update "//Simulation/@sourcePath" --value "model.gaml" outputs/file.xml; 20 xmlstarlet edit --inplace --update "//Simulation/@sourcePath" --value "model.gaml" outputs/file.xml;
25 cp outputs/file.xml ${file_xml}; 21 cp outputs/file.xml ${file_xml};
26 ]]> 22 ]]>
27 </command> 23 </command>