Mercurial > repos > siwaa > gama_legacy_gen

diff gama_legacy_gen.xml @ 2:470b8ed4ce1a draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_HEADLESS_LEGACY/galaxy-tools/gama_legacy_gen commit f3324742c1aa0050df56ad3f868018360a10a6ab-dirty
author siwaa
date Mon, 09 Dec 2024 16:58:58 +0000
parents 05a4aedfa923
children 4f6c9c14b8e4
line wrap: on
line diff
--- a/gama_legacy_gen.xml	Mon Nov 18 13:58:30 2024 +0000
+++ b/gama_legacy_gen.xml	Mon Dec 09 16:58:58 2024 +0000
@@ -13,13 +13,9 @@
 
   <command detect_errors="aggressive">
     <![CDATA[
-    mkdir -p software; mkdir -p inputs; mkdir -p outputs;
-    cp $__tool_directory__/src/MY_gama-headless.sh .;
+    mkdir -p inputs; mkdir -p outputs;
     cp $__tool_directory__/src/cmd_gama_headless_legacy_gen.sh .;
     cp ${model_gaml} inputs/model.gaml;
-    cp -fr /opt/gama-platform software/.;
-    cp MY_gama-headless.sh software/gama-platform/headless/. ;
-    chmod -R 777 software;
     /bin/bash cmd_gama_headless_legacy_gen.sh ${experiment_name} > outputs/GEN.txt;
     xmlstarlet edit --inplace --update "//Simulation/@sourcePath" --value "model.gaml" outputs/file.xml;
     cp outputs/file.xml ${file_xml};