Mercurial > repos > siwaa > gama_legacy_gen
changeset 2:470b8ed4ce1a draft
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_HEADLESS_LEGACY/galaxy-tools/gama_legacy_gen commit f3324742c1aa0050df56ad3f868018360a10a6ab-dirty
| author | siwaa |
|---|---|
| date | Mon, 09 Dec 2024 16:58:58 +0000 |
| parents | 05a4aedfa923 |
| children | 4f6c9c14b8e4 |
| files | gama_legacy_gen.xml src/cmd_gama_headless_legacy_gen.sh |
| diffstat | 2 files changed, 2 insertions(+), 6 deletions(-) [+] |
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--- a/gama_legacy_gen.xml Mon Nov 18 13:58:30 2024 +0000 +++ b/gama_legacy_gen.xml Mon Dec 09 16:58:58 2024 +0000 @@ -13,13 +13,9 @@ <command detect_errors="aggressive"> <![CDATA[ - mkdir -p software; mkdir -p inputs; mkdir -p outputs; - cp $__tool_directory__/src/MY_gama-headless.sh .; + mkdir -p inputs; mkdir -p outputs; cp $__tool_directory__/src/cmd_gama_headless_legacy_gen.sh .; cp ${model_gaml} inputs/model.gaml; - cp -fr /opt/gama-platform software/.; - cp MY_gama-headless.sh software/gama-platform/headless/. ; - chmod -R 777 software; /bin/bash cmd_gama_headless_legacy_gen.sh ${experiment_name} > outputs/GEN.txt; xmlstarlet edit --inplace --update "//Simulation/@sourcePath" --value "model.gaml" outputs/file.xml; cp outputs/file.xml ${file_xml};
--- a/src/cmd_gama_headless_legacy_gen.sh Mon Nov 18 13:58:30 2024 +0000 +++ b/src/cmd_gama_headless_legacy_gen.sh Mon Dec 09 16:58:58 2024 +0000 @@ -23,5 +23,5 @@ #EXPERIMENT_NAME="prey_predator" HOME=$(echo $PWD) -cd software/gama-platform/headless; +cd /opt/gama-platform/headless; /bin/bash MY_gama-headless.sh -xml ${EXPERIMENT_NAME} ${HOME}/inputs/model.gaml ${HOME}/outputs/file.xml