Mercurial > repos > siwaa > insilicow

annotate test-data/input/ALIEN/farmer-plan_ALIEN.txt @ 3:3fe3e1e6a40b draft

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"planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
author siwaa
date Mon, 25 Aug 2025 16:37:43 +0000
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3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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1 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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2 # #
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3 # InSiliCow #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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4 # Virtual farm specification #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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5 # #
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6 #################################################################################################################
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3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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8 #################################################################################################################
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9 #====== GENERAL SETTINGS #
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10 #################################################################################################################
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12 #______ Include files
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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13 @include farmer-log.txt # providing log action and trigger
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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14 @include farmer-base.txt # providing basic components
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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16 #______ Models: specify models for individual cows
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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17 param_general{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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18 garuns_type = garuns_olivier
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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19 rpm_type = rpm_lite
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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20 abortion_type = abortion_olivier
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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21 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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23 #______ Simulation: provide time range, output database and code name
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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24 init{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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25 begin_date = $start_date$ 00:00:00
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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26 end_date = $stop_date$ 23:59:59
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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27 output_db = db_events.sqlite
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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28 output_config = config.txt
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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29 name = $sim_id$
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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30 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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31
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32 #______ Log Farm information
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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33 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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34 trigger = init
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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35 action = log_db farm_tag $farm_tag$
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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36 action = log_db start_date $start_date$
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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37 action = log_db stop_date $stop_date$
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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38 action = log_db now_date $now_date$
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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39 action = log_db latitude $latitude$
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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40 action = log_db longitude $longitude$
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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41 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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42
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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43 #______ End of simulation
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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44 trigger{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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45 type = chron
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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46 name = tr_end_simu
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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47 scheme = $stop_date$ 23:59:58
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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48 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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49
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50 #______ Past and future
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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51 condition{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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52 type = chron_range
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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53 name = past
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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54 from = $start_date$ 00:00:00
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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55 to = $now_date$ 00:00:01
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56 }
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57
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58 condition{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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59 type = chron_range
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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60 name = future
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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61 from = $now_date$ 00:00:00
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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62 to = $stop_date$ 23:59:59
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63 }
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64
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65 #______ Day one
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66 trigger{
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67 type = chron
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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68 name = day_one_herd
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69 scheme = $start_date$ 23:59:59
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70 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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71 trigger{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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72 type = custom
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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73 name = day_one
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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74 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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75 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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76 trigger = day_one_herd
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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77 action = broadcast_now day_one
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78 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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79
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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80 #______ Calving tag
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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81 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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82 trigger = calving
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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83 condition = calf_sex male
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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84 condition = future
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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85 action = log_db birth_of_male no_tag
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86 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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87 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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88 trigger = calving
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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89 condition = calf_sex female
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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90 condition = future
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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91 action = log_db birth_of_female no_tag
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92 }
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93
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94 #______ Manage initial dam
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95 state{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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96 state = INITIAL-DAM
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
97 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
98
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
99 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
100 trigger = day_one
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
101 action = state_add INITIAL-DAM
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
102 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
103 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
104 trigger = parturition
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
105 condition = is_in INITIAL-DAM
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
106 condition = not is_in IN_WILD
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
107 action = trigger_later tr_delete_cow 1
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
108 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
109 trigger{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
110 type = custom
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
111 name = tr_delete_cow
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
112 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
113 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
114 trigger = tr_delete_cow
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
115 action = delete_cow remove_initial_dam
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
116 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
117
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
118 #______ Stoechio
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
119 stoechio{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
120
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
121 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
122
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
123 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
124 #====== FARMING #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
125 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
126
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
127 #______ Keep cows and calves in farm: no natural mating
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
128
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
129 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
130 trigger = enter IN_WILD
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
131 action = state_move IN_WILD IN_FARM
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
132 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
133
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
134 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
135 trigger = enter WILD_COW
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
136 action = state_move WILD_COW DRY_COW
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
137 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
138
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
139 #______ Remove calf from dam: no natural weaning
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
140
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
141 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
142 trigger = enter SUCKLING_CALF
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
143 action = state_move SUCKLING_CALF NURSED_CALF
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
144 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
145
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
146 #______ Milk cows: no natural drying-off at calf weaning
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
147
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
148 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
149 trigger = enter NURSING_COW
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
150 action = state_move NURSING_COW LACTATING_COW
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
151 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
152
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
153 #______ Optimal feeding
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
154
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
155 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
156 trigger = enter IN_FARM
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
157 action = trigger_later tr_optimal_feeding 0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
158 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
159 trigger{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
160 type = custom
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
161 name = tr_optimal_feeding
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
162 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
163 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
164 trigger = tr_optimal_feeding
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
165 action = change_food optimal
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
166 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
167
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
168
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
169 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
170 #====== FARM COMPONENTS: genotype #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
171 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
172
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
173 #______ Genetic_sD: provide Mendelian sampling std dev for transmission of Genetic Scaling Parameters (GSP)
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
174 # GSP_newborn ~ Normal [ (GSP_mother + GSP_father)/2 , GSP_sd ] | within (min, max)
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
175
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
176 genetic_sd{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
177 garuns_olivier.WM{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
178 sd = 50
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
179 min = 200
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
180 max = 800
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
181 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
182
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
183 garuns_olivier.khi_M {
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
184 sd = 0.06
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
185 min = 0.1
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
186 max = 0.6
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
187 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
188
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
189 garuns_olivier.b0{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
190 sd = 0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
191 min = 0.80
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
192 max = 2.40
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
193 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
194
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
195 garuns_olivier.nu_X{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
196 sd = 0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
197 min = 0.2
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
198 max = 1.8
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
199 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
200
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
201 garuns_olivier.nu_Y{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
202 sd = 0.1
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
203 min = 0.2
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
204 max = 1.8
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
205 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
206
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
207 garuns_olivier.nu_F{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
208 sd = 0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
209 min = 0.50
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
210 max = 1.50
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
211 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
212
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
213 garuns_olivier.nu_P{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
214 sd = 0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
215 min = 0.50
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
216 max = 1.50
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
217 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
218
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
219 garuns_olivier.eD_star{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
220 sd = 0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
221 min = 9.0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
222 max = 15.0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
223 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
224
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
225 garuns_olivier.NDF_star{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
226 sd = 0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
227 min = 0.10
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
228 max = 0.90
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
229 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
230
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
231 garuns_olivier.psi{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
232 sd = 0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
233 min = 0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
234 max = 1
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
235 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
236
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
237 rpm_lite.nu_I{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
238 sd = 0.007
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
239 min = 0.00
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
240 max = 0.20
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
241 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
242
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
243 rpm_lite.nu_B{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
244 sd = 0.07
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
245 min = 1.20
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
246 max = 2.20
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
247 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
248
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
249 rpm_lite.nu_Z{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
250 sd = 0.02
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
251 min = 0.90
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
252 max = 1.10
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
253 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
254 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
255
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
256 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
257 #====== FARM COMPONENTS: herd (genotype-based initialization of individual cows) #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
258 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
259
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
260 #______ INITIALIZATION of ALIEN farm
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
261
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
262 #______ Initial dam
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
263 init_cow{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
264 name=initial_dam
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
265
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
266 ### ABORTION rules according to days in pregnancy (dip)
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
267 abortion_olivier.delta = constant 3.0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
268 abortion_olivier.enabled = never
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
269 abortion_olivier.dip = vector constant 17 ; constant 64
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
270 abortion_olivier.abo = vector constant 0.02 ; constant 0.005 ; constant 0.0004
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
271 garuns_olivier.WM = norm99 450 50 #450 ± 25
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
272 garuns_olivier.khi_M = norm99 0.30 0.03 # 0.33 ± 0.03
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
273 garuns_olivier.b0 = norm99 1.6 0 # 1.6 ± 0.16
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
274 garuns_olivier.nu_X = norm99 1 0 # 1.0 ± 0.10
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
275 garuns_olivier.nu_Y = norm99 1.1 0.1 # 1.0 ± 0.10
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
276 garuns_olivier.nu_F = norm99 1 0 # 1.0 ± 0.02
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
277 garuns_olivier.nu_P = norm99 1 0 # 1.0 ± 0.02
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
278 garuns_olivier.eD_star = norm99 10.7 0 # 10.7 ± 0.5
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
279 garuns_olivier.NDF_star = norm99 0.5 0 # 0.5 ± 0.02
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
280 garuns_olivier.psi = norm99 0.5 0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
281 rpm_lite.nu_B = norm99 1.7 0.07 # 1.7 ± 0.07
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
282 rpm_lite.nu_Z = norm99 1 0.02 # 1.0 ± 0.02
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
283 rpm_lite.nu_I = norm99 0.025 0.007 # 0.026 ± 0.007
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
284 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
285
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
286 #______ Initial sire
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
287
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
288 breed{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
289 breed = initial
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
290 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
291
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
292 init_bull{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
293 name=semen_initial_sire
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
294 bull.breed_name = initial
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
295 bull.semens_quality = constant 1.0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
296 bull.female_ratio = constant 1.0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
297 garuns_olivier.WM = norm99 450 50 #450 ± 25
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
298 garuns_olivier.khi_M = norm99 0.30 0.03 # 0.33 ± 0.03
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
299 garuns_olivier.b0 = norm99 1.6 0 # 1.6 ± 0.16
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
300 garuns_olivier.nu_X = norm99 1 0 # 1.0 ± 0.10
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
301 garuns_olivier.nu_Y = norm99 1.1 0.1 # 1.0 ± 0.10
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
302 garuns_olivier.nu_F = norm99 1 0 # 1.0 ± 0.02
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
303 garuns_olivier.nu_P = norm99 1 0 # 1.0 ± 0.02
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
304 garuns_olivier.eD_star = norm99 10.7 0 # 10.7 ± 0.5
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
305 garuns_olivier.NDF_star = norm99 0.5 0 # 0.5 ± 0.02
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
306 garuns_olivier.psi = norm99 0.5 0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
307 rpm_lite.nu_B = norm99 1.7 0.07 # 1.7 ± 0.07
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
308 rpm_lite.nu_Z = norm99 1 0.02 # 1.0 ± 0.02
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
309 rpm_lite.nu_I = norm99 0.025 0.007 # 0.026 ± 0.007
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
310 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
311
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
312
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
313 #______ Generate dams of each individual cow to create
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
314
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
315 action{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
316 type = buy_cow
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
317 name = buy_dam_of_id0001
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
318 init_cow = initial_dam
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
319 init_bull = semen_initial_sire
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
320 age = 600
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
321 days_after_conception = -1
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
322 number = 1
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
323 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
324
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
325 action{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
326 type = buy_cow
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
327 name = buy_dam_of_id0002
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
328 init_cow = initial_dam
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
329 init_bull = semen_initial_sire
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
330 age = 600
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
331 days_after_conception = -30
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
332 number = 1
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
333 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
334
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
335 action{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
336 type = buy_cow
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
337 name = buy_dam_of_id0003
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
338 init_cow = initial_dam
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
339 init_bull = semen_initial_sire
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
340 age = 600
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
341 days_after_conception = -60
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
342 number = 1
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
343 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
344
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
345 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
346 trigger = init
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
347 action = buy_dam_of_id0001
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
348 action = buy_dam_of_id0002
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
349 action = buy_dam_of_id0003
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
350 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
351
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
352
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
353 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
354 #====== FARM COMPONENTS: semen (genotype-based initialization of semen from individual bulls) #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
355 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
356
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
357
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
358 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
359 #====== FARM COMPONENTS: heat detection #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
360 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
361
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
362
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
363 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
364 #====== FARM COMPONENTS: feedstuffs #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
365 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
366
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
367
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
368 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
369 #====== FARM COMPONENTS: diets #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
370 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
371
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
372
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
373 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
374 #====== FARM COMPONENTS: time schemes #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
375 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
376
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
377
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
378 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
379 #====== FARM COMPONENTS: groups #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
380 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
381
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
382
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
383 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
384 #====== FARM COMPONENTS: operations #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
385 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
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386
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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parents:
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387
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
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388 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
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389 #====== FARM COMPONENTS: transfers #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
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390 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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parents:
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391
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
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392
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
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393 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
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394 #====== FARM COMPONENTS: perturbations #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
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395 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
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396
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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parents:
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397
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
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398 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
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399 #====== FARM COMPONENTS: parcels #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
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400 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
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401
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
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402