Mercurial > repos > siwaa > redelac_stics_g

comparison redelacSticsInputGenerator.xml @ 8:0625e6a639ea draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://forgemia.inra.fr/redelac commit 2574be7ccd1fe343e6a8b0e4535e5db43008945f"
author siwaa
date Wed, 30 Aug 2023 08:23:12 +0000
parents fb6f7d60508d
children 2a6d7d053ba7
comparison
equal deleted inserted replaced
7:fb6f7d60508d 8:0625e6a639ea
1 <tool id="redelacSticsInputGenerator" name="redelacSticsInputGenerator" version="1.0.1"> 1 <tool id="redelacSticsInputGenerator" name="redelacSticsInputGenerator" version="1.0.2">
2 <description>to run generate Stics Inputs for REDELAC</description> 2 <description>to run generate Stics Inputs for REDELAC</description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/quaysofthestics/sticsquays/rstudio_stics_test:10.0.0</container> 4 <container type="singularity">docker://registry.forgemia.inra.fr/redelac/redelac-toolbox/sticsrfiles:9a2d54c0674a6b902299dd22fdd37c2f67509fa2</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="aggressive"> 6 <command detect_errors="aggressive">
7 <![CDATA[ 7 <![CDATA[
8 bash $__tool_directory__/redelacSticsInputGenerator.bash ${IterUsmX} $__tool_directory__ ${Workspace} ${Climat} ${USMs} ${Tec} ${Ini} ${Station} ${GeneratedWorkspace} 8 bash $__tool_directory__/redelacSticsInputGenerator.bash ${IterUsmX} $__tool_directory__ ${Workspace} ${Climat} ${USMs} ${Tec} ${Ini} ${Station} ${GeneratedWorkspace}
9 ]]>{ 9 ]]>{
22 <data format="zip" name="GeneratedWorkspace" 22 <data format="zip" name="GeneratedWorkspace"
23 label="GeneratedWorkspace${Tag}"> 23 label="GeneratedWorkspace${Tag}">
24 </data> 24 </data>
25 </outputs> 25 </outputs>
26 <tests> 26 <tests>
27 <test>
28 <param name="Workspace" value="input/sticsBaseWs.zip" ftype="zip" />
29 <param name="Climat" value="input/flatMeteo.zip" ftype="zip" />
30 <param name="USMs" value="input/USMsSheet.csv" ftype="csv" />
31 <param name="Tec" value="input/TecSheet.csv" ftype="csv" />
32 <param name="Ini" value="input/IniSheet.csv" ftype="csv"/>
33 <param name="Station" value="input/StationsSheet.csv" ftype="csv"/>
34 <output name="GeneratedWorkspace" ftype="zip" >
35 <assert_contents>
36 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-NA-1973-PP\/new_travail.usm">
37 <has_text text="806_1893-637_NPP1-8-2-PP-NA-1973-PP" />
38 </has_archive_member>
39 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-NA-1974-PP\/new_travail.usm">
40 <has_text text="806_1893-637_NPP1-8-2-PP-NA-1974-PP" />
41 </has_archive_member>
42 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-NA-1975-PP\/new_travail.usm">
43 <has_text text="806_1893-637_NPP1-8-2-PP-NA-1975-PP" />
44 </has_archive_member>
45 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-ref-1976-PP\/new_travail.usm">
46 <has_text text="806_1893-637_NPP1-8-2-PP-ref-1976-PP" />
47 </has_archive_member>
48 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-ref-1977-PP\/new_travail.usm">
49 <has_text text="806_1893-637_NPP1-8-2-PP-ref-1977-PP" />
50 </has_archive_member>
51 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-ref-2000-PP\/new_travail.usm">
52 <has_text text="806_1893-637_NPP1-8-2-PP-ref-2000-PP" />
53 </has_archive_member>
54 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-ref-2001-PP\/new_travail.usm">
55 <has_text text="806_1893-637_NPP1-8-2-PP-ref-2001-PP" />
56 </has_archive_member>
57 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-ref-2002-PP\/new_travail.usm">
58 <has_text text="806_1893-637_NPP1-8-2-PP-ref-2002-PP" />
59 </has_archive_member>
60 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-ref-2003-PP\/new_travail.usm">
61 <has_text text="806_1893-637_NPP1-8-2-PP-ref-2003-PP" />
62 </has_archive_member>
63 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-ref-2004-PP\/new_travail.usm">
64 <has_text text="806_1893-637_NPP1-8-2-PP-ref-2004-PP" />
65 </has_archive_member>
66 </assert_contents>
67 </output>
68 </test>
27 </tests> 69 </tests>
28 <help> 70 <help>
29 *The usage of this tool is restricted to the user of the stics_authorized group.* 71 *The usage of this tool is restricted to the user of the stics_authorized group.*
30 72
31 *To be granted, apply to the Project Stics Team and then request to SIWAA* 73 *To be granted, apply to the Project Stics Team and then request to SIWAA*