Mercurial > repos > siwaa > redelac_stics_g

annotate redelacSticsInputGenerator.xml @ 8:0625e6a639ea draft

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"planemo upload for repository https://forgemia.inra.fr/redelac commit 2574be7ccd1fe343e6a8b0e4535e5db43008945f"
author siwaa
date Wed, 30 Aug 2023 08:23:12 +0000
parents fb6f7d60508d
children 2a6d7d053ba7
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1 <tool id="redelacSticsInputGenerator" name="redelacSticsInputGenerator" version="1.0.2">
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2 <description>to run generate Stics Inputs for REDELAC</description>
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3 <requirements>
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4 <container type="singularity">docker://registry.forgemia.inra.fr/redelac/redelac-toolbox/sticsrfiles:9a2d54c0674a6b902299dd22fdd37c2f67509fa2</container>
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5 </requirements>
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6 <command detect_errors="aggressive">
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7 <![CDATA[
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8 bash $__tool_directory__/redelacSticsInputGenerator.bash ${IterUsmX} $__tool_directory__ ${Workspace} ${Climat} ${USMs} ${Tec} ${Ini} ${Station} ${GeneratedWorkspace}
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9 ]]>{
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10 </command>
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11 <inputs>
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12 <param name="Workspace" type="data" format="zip" label="Select a stics Workspace (zip file)"/>
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13 <param name="Climat" type="data" format="zip" label="Select a climat scenario (zip file)"/>
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14 <param name="USMs" type="data" format="csv" label="Select the USMs sheet (csv)"/>
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15 <param name="Tec" type="data" format="csv" label="Select the Tec sheet (csv)"/>
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16 <param name="Ini" type="data" format="csv" label="Select the Ini sheet (csv)"/>
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17 <param name="Station" type="data" format="csv" label="Select the Station sheet (csv)"/>
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18 <param name="Tag" type="text" value="" label="Outputs tag"/>
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19 <param name="IterUsmX" type="boolean" checked="true" truevalue="usmx_one_after_other" falsevalue="usmx_at_once"/>
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20 </inputs>
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21 <outputs>
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22 <data format="zip" name="GeneratedWorkspace"
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23 label="GeneratedWorkspace${Tag}">
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24 </data>
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25 </outputs>
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26 <tests>
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27 <test>
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28 <param name="Workspace" value="input/sticsBaseWs.zip" ftype="zip" />
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29 <param name="Climat" value="input/flatMeteo.zip" ftype="zip" />
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30 <param name="USMs" value="input/USMsSheet.csv" ftype="csv" />
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31 <param name="Tec" value="input/TecSheet.csv" ftype="csv" />
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32 <param name="Ini" value="input/IniSheet.csv" ftype="csv"/>
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33 <param name="Station" value="input/StationsSheet.csv" ftype="csv"/>
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34 <output name="GeneratedWorkspace" ftype="zip" >
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35 <assert_contents>
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36 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-NA-1973-PP\/new_travail.usm">
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37 <has_text text="806_1893-637_NPP1-8-2-PP-NA-1973-PP" />
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38 </has_archive_member>
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39 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-NA-1974-PP\/new_travail.usm">
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40 <has_text text="806_1893-637_NPP1-8-2-PP-NA-1974-PP" />
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41 </has_archive_member>
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42 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-NA-1975-PP\/new_travail.usm">
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43 <has_text text="806_1893-637_NPP1-8-2-PP-NA-1975-PP" />
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44 </has_archive_member>
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45 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-ref-1976-PP\/new_travail.usm">
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46 <has_text text="806_1893-637_NPP1-8-2-PP-ref-1976-PP" />
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47 </has_archive_member>
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48 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-ref-1977-PP\/new_travail.usm">
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49 <has_text text="806_1893-637_NPP1-8-2-PP-ref-1977-PP" />
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50 </has_archive_member>
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51 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-ref-2000-PP\/new_travail.usm">
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52 <has_text text="806_1893-637_NPP1-8-2-PP-ref-2000-PP" />
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53 </has_archive_member>
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54 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-ref-2001-PP\/new_travail.usm">
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55 <has_text text="806_1893-637_NPP1-8-2-PP-ref-2001-PP" />
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56 </has_archive_member>
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57 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-ref-2002-PP\/new_travail.usm">
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58 <has_text text="806_1893-637_NPP1-8-2-PP-ref-2002-PP" />
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59 </has_archive_member>
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60 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-ref-2003-PP\/new_travail.usm">
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61 <has_text text="806_1893-637_NPP1-8-2-PP-ref-2003-PP" />
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62 </has_archive_member>
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63 <has_archive_member path="rot8_2\/txt_files\/806_1893-637_NPP1-8-2-PP-ref-2004-PP\/new_travail.usm">
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64 <has_text text="806_1893-637_NPP1-8-2-PP-ref-2004-PP" />
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65 </has_archive_member>
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66 </assert_contents>
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67 </output>
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68 </test>
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69 </tests>
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70 <help>
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71 *The usage of this tool is restricted to the user of the stics_authorized group.*
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72
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73 *To be granted, apply to the Project Stics Team and then request to SIWAA*
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74
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75 Documentation
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76 -------------
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77 A tool to generate Stics Inputs according to a plan for REDELAC
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78
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79 Credits
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80 -------
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81 - Wrapped Tool Author: https://www6.paca.inrae.fr/stics_eng/About-us/Project-Stics-Team
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82 - Stics Site: https://www6.paca.inra.fr/stics_eng
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83 - Galaxy Tool Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
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84 - Copyright: INRAE
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85 </help>
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86 </tool>