Mercurial > repos > siwaa > redelac_stics_g

comparison redelacSticsInputGenerator.bash @ 5:4f8d87b9c246 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://forgemia.inra.fr/redelac commit b3a95e69b8c2496ff3ec12c854404798d8bc55b1"
author siwaa
date Tue, 04 Jul 2023 16:37:44 +0000
parents
children fb6f7d60508d
comparison
equal deleted inserted replaced
4:af7d9ca55205 5:4f8d87b9c246
1 cp -r /home/rstudio/JavaSTICS-1.5.1-STICS-10.0.0/JavaSTICS-1.5.1-STICS-10.0.0 . &&
2 rm -rf JavaSTICS-1.5.1-STICS-10.0.0/config &&
3 cp -r $1/config JavaSTICS-1.5.1-STICS-10.0.0 &&
4 unzip $2 -d TMP &&
5 export WSname=$(ls TMP) &&
6 mv TMP/* JavaSTICS-1.5.1-STICS-10.0.0/WS &&
7 cp JavaSTICS-1.5.1-STICS-10.0.0/config/param_gen.xml JavaSTICS-1.5.1-STICS-10.0.0/WS &&
8 cp JavaSTICS-1.5.1-STICS-10.0.0/config/param_newform.xml JavaSTICS-1.5.1-STICS-10.0.0/WS &&
9 unzip $3 -d TMPbis &&
10 mv TMPbis/*/* JavaSTICS-1.5.1-STICS-10.0.0/WS &&
11 cp $4 JavaSTICS-1.5.1-STICS-10.0.0/WS/USMs.csv &&
12 cp $5 JavaSTICS-1.5.1-STICS-10.0.0/WS/Tec.csv &&
13 cp $6 JavaSTICS-1.5.1-STICS-10.0.0/WS/Ini.csv &&
14 cp $7 JavaSTICS-1.5.1-STICS-10.0.0/WS/Station.csv &&
15 cd JavaSTICS-1.5.1-STICS-10.0.0 &&
16 Rscript --verbose $1/redelacSticsInputGenerator.R &&
17 rm WS/1* &&
18 mv WS $WSname &&
19 zip -r $WSname $WSname &&
20 cp $WSname.zip $8