Mercurial > repos > siwaa > redelac_stics_g

diff redelacSticsInputGenerator.bash @ 5:4f8d87b9c246 draft

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"planemo upload for repository https://forgemia.inra.fr/redelac commit b3a95e69b8c2496ff3ec12c854404798d8bc55b1"
author siwaa
date Tue, 04 Jul 2023 16:37:44 +0000
parents
children fb6f7d60508d
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/redelacSticsInputGenerator.bash	Tue Jul 04 16:37:44 2023 +0000
@@ -0,0 +1,20 @@
+cp -r /home/rstudio/JavaSTICS-1.5.1-STICS-10.0.0/JavaSTICS-1.5.1-STICS-10.0.0 . &&
+rm -rf JavaSTICS-1.5.1-STICS-10.0.0/config &&
+cp -r $1/config JavaSTICS-1.5.1-STICS-10.0.0 &&
+unzip $2 -d TMP &&
+export WSname=$(ls TMP) &&
+mv TMP/* JavaSTICS-1.5.1-STICS-10.0.0/WS &&
+cp JavaSTICS-1.5.1-STICS-10.0.0/config/param_gen.xml JavaSTICS-1.5.1-STICS-10.0.0/WS &&
+cp JavaSTICS-1.5.1-STICS-10.0.0/config/param_newform.xml JavaSTICS-1.5.1-STICS-10.0.0/WS &&
+unzip $3 -d TMPbis &&
+mv TMPbis/*/* JavaSTICS-1.5.1-STICS-10.0.0/WS &&
+cp $4 JavaSTICS-1.5.1-STICS-10.0.0/WS/USMs.csv &&
+cp $5 JavaSTICS-1.5.1-STICS-10.0.0/WS/Tec.csv &&
+cp $6 JavaSTICS-1.5.1-STICS-10.0.0/WS/Ini.csv &&
+cp $7 JavaSTICS-1.5.1-STICS-10.0.0/WS/Station.csv &&
+cd JavaSTICS-1.5.1-STICS-10.0.0 &&
+Rscript --verbose $1/redelacSticsInputGenerator.R &&
+rm WS/1* &&
+mv WS $WSname &&
+zip -r $WSname $WSname &&
+cp $WSname.zip $8