Mercurial > repos > siwaa > redelac_stics_g

comparison redelacSticsInputGenerator.bash @ 7:fb6f7d60508d draft

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"planemo upload for repository https://forgemia.inra.fr/redelac commit d1c69d78e9ccfe06ceb7609dce59b438cd94d9d8"
author siwaa
date Thu, 20 Jul 2023 16:18:59 +0000
parents 4f8d87b9c246
children 0625e6a639ea
comparison
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6:bb1ac57f8545 7:fb6f7d60508d
1 cp -r /home/rstudio/JavaSTICS-1.5.1-STICS-10.0.0/JavaSTICS-1.5.1-STICS-10.0.0 . && 1 cp -r /home/rstudio/JavaSTICS-1.5.1-STICS-10.0.0/JavaSTICS-1.5.1-STICS-10.0.0 . &&
2 rm -rf JavaSTICS-1.5.1-STICS-10.0.0/config && 2 rm -rf JavaSTICS-1.5.1-STICS-10.0.0/config &&
3 cp -r $1/config JavaSTICS-1.5.1-STICS-10.0.0 && 3 cp -r $2/config JavaSTICS-1.5.1-STICS-10.0.0 &&
4 unzip $2 -d TMP && 4 unzip -q $3 -d TMP &&
5 export WSname=$(ls TMP) && 5 export WSname=$(ls TMP) &&
6 mv TMP/* JavaSTICS-1.5.1-STICS-10.0.0/WS && 6 mv TMP/* JavaSTICS-1.5.1-STICS-10.0.0/WS &&
7 cp JavaSTICS-1.5.1-STICS-10.0.0/config/param_gen.xml JavaSTICS-1.5.1-STICS-10.0.0/WS && 7 cp JavaSTICS-1.5.1-STICS-10.0.0/config/param_gen.xml JavaSTICS-1.5.1-STICS-10.0.0/WS &&
8 cp JavaSTICS-1.5.1-STICS-10.0.0/config/param_newform.xml JavaSTICS-1.5.1-STICS-10.0.0/WS && 8 cp JavaSTICS-1.5.1-STICS-10.0.0/config/param_newform.xml JavaSTICS-1.5.1-STICS-10.0.0/WS &&
9 unzip $3 -d TMPbis && 9 unzip -q $4 -d TMPbis &&
10 mv TMPbis/*/* JavaSTICS-1.5.1-STICS-10.0.0/WS && 10 mv TMPbis/*/* JavaSTICS-1.5.1-STICS-10.0.0/WS &&
11 cp $4 JavaSTICS-1.5.1-STICS-10.0.0/WS/USMs.csv && 11 cp $5 JavaSTICS-1.5.1-STICS-10.0.0/WS/USMs.csv &&
12 cp $5 JavaSTICS-1.5.1-STICS-10.0.0/WS/Tec.csv && 12 cp $6 JavaSTICS-1.5.1-STICS-10.0.0/WS/Tec.csv &&
13 cp $6 JavaSTICS-1.5.1-STICS-10.0.0/WS/Ini.csv && 13 cp $7 JavaSTICS-1.5.1-STICS-10.0.0/WS/Ini.csv &&
14 cp $7 JavaSTICS-1.5.1-STICS-10.0.0/WS/Station.csv && 14 cp $8 JavaSTICS-1.5.1-STICS-10.0.0/WS/Station.csv &&
15 cd JavaSTICS-1.5.1-STICS-10.0.0 && 15 cd JavaSTICS-1.5.1-STICS-10.0.0 &&
16 Rscript --verbose $1/redelacSticsInputGenerator.R && 16 Rscript --verbose $2/redelacSticsInputGenerator.R $1 &&
17 rm WS/1* && 17 rm WS/1* &&
18 mv WS $WSname && 18 mv WS $WSname &&
19 zip -r $WSname $WSname && 19 zip -q -r $WSname $WSname &&
20 cp $WSname.zip $8 20 cp $WSname.zip $8