Mercurial > repos > siwaa > redelac_stics_g

diff redelacSticsInputGenerator.bash @ 7:fb6f7d60508d draft

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"planemo upload for repository https://forgemia.inra.fr/redelac commit d1c69d78e9ccfe06ceb7609dce59b438cd94d9d8"
author siwaa
date Thu, 20 Jul 2023 16:18:59 +0000
parents 4f8d87b9c246
children 0625e6a639ea
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line diff
--- a/redelacSticsInputGenerator.bash	Fri Jul 07 10:19:22 2023 +0000
+++ b/redelacSticsInputGenerator.bash	Thu Jul 20 16:18:59 2023 +0000
@@ -1,20 +1,20 @@
 cp -r /home/rstudio/JavaSTICS-1.5.1-STICS-10.0.0/JavaSTICS-1.5.1-STICS-10.0.0 . &&
 rm -rf JavaSTICS-1.5.1-STICS-10.0.0/config &&
-cp -r $1/config JavaSTICS-1.5.1-STICS-10.0.0 &&
-unzip $2 -d TMP &&
+cp -r $2/config JavaSTICS-1.5.1-STICS-10.0.0 &&
+unzip -q $3 -d TMP &&
 export WSname=$(ls TMP) &&
 mv TMP/* JavaSTICS-1.5.1-STICS-10.0.0/WS &&
 cp JavaSTICS-1.5.1-STICS-10.0.0/config/param_gen.xml JavaSTICS-1.5.1-STICS-10.0.0/WS &&
 cp JavaSTICS-1.5.1-STICS-10.0.0/config/param_newform.xml JavaSTICS-1.5.1-STICS-10.0.0/WS &&
-unzip $3 -d TMPbis &&
+unzip -q $4 -d TMPbis &&
 mv TMPbis/*/* JavaSTICS-1.5.1-STICS-10.0.0/WS &&
-cp $4 JavaSTICS-1.5.1-STICS-10.0.0/WS/USMs.csv &&
-cp $5 JavaSTICS-1.5.1-STICS-10.0.0/WS/Tec.csv &&
-cp $6 JavaSTICS-1.5.1-STICS-10.0.0/WS/Ini.csv &&
-cp $7 JavaSTICS-1.5.1-STICS-10.0.0/WS/Station.csv &&
+cp $5 JavaSTICS-1.5.1-STICS-10.0.0/WS/USMs.csv &&
+cp $6 JavaSTICS-1.5.1-STICS-10.0.0/WS/Tec.csv &&
+cp $7 JavaSTICS-1.5.1-STICS-10.0.0/WS/Ini.csv &&
+cp $8 JavaSTICS-1.5.1-STICS-10.0.0/WS/Station.csv &&
 cd JavaSTICS-1.5.1-STICS-10.0.0 &&
-Rscript --verbose $1/redelacSticsInputGenerator.R &&
+Rscript --verbose $2/redelacSticsInputGenerator.R $1 &&
 rm WS/1* &&
 mv WS $WSname &&
-zip -r $WSname $WSname &&
+zip -q -r $WSname $WSname &&
 cp $WSname.zip $8