Mercurial > repos > siwaa > redelac_stics_g
diff redelacSticsInputGenerator.bash @ 9:2a6d7d053ba7 draft
"planemo upload for repository https://forgemia.inra.fr/redelac commit adcac73e150f1f821b4b7f7673a490dc0fadc936"
| author | siwaa |
|---|---|
| date | Mon, 25 Sep 2023 16:25:51 +0000 |
| parents | 0625e6a639ea |
| children | f707c2fb725b |
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--- a/redelacSticsInputGenerator.bash Wed Aug 30 08:23:12 2023 +0000 +++ b/redelacSticsInputGenerator.bash Mon Sep 25 16:25:51 2023 +0000 @@ -1,20 +1,20 @@ -cp -r /home/rstudio/JavaSTICS-1.5.1-STICS-10.0.0/JavaSTICS-1.5.1-STICS-10.0.0 . && +cp -r /home/rstudio/JavaSTICS-1.5.1-STICS-10.0.0 . && rm -rf JavaSTICS-1.5.1-STICS-10.0.0/config && -cp -r $2/config JavaSTICS-1.5.1-STICS-10.0.0 && -unzip -q $3 -d TMP && +cp -r $4/config JavaSTICS-1.5.1-STICS-10.0.0 && +unzip -q $5 -d TMP && export WSname=$(ls TMP) && mv TMP/* JavaSTICS-1.5.1-STICS-10.0.0/WS && cp JavaSTICS-1.5.1-STICS-10.0.0/config/param_gen.xml JavaSTICS-1.5.1-STICS-10.0.0/WS && cp JavaSTICS-1.5.1-STICS-10.0.0/config/param_newform.xml JavaSTICS-1.5.1-STICS-10.0.0/WS && -unzip -q $4 -d TMPbis && +unzip -q $6 -d TMPbis && mv TMPbis/*/* JavaSTICS-1.5.1-STICS-10.0.0/WS && -cp $5 JavaSTICS-1.5.1-STICS-10.0.0/WS/USMs.csv && -cp $6 JavaSTICS-1.5.1-STICS-10.0.0/WS/Tec.csv && -cp $7 JavaSTICS-1.5.1-STICS-10.0.0/WS/Ini.csv && -cp $8 JavaSTICS-1.5.1-STICS-10.0.0/WS/Station.csv && +cp $7 JavaSTICS-1.5.1-STICS-10.0.0/WS/USMs.csv && +cp $8 JavaSTICS-1.5.1-STICS-10.0.0/WS/Tec.csv && +cp $9 JavaSTICS-1.5.1-STICS-10.0.0/WS/Ini.csv && +cp ${10} JavaSTICS-1.5.1-STICS-10.0.0/WS/Station.csv && cd JavaSTICS-1.5.1-STICS-10.0.0 && -Rscript --verbose $2/redelacSticsInputGenerator.R $1 && +Rscript --verbose $4/redelacSticsInputGenerator.R $1 $2 $3 && rm WS/1* && mv WS $WSname && zip -q -r $WSname $WSname && -cp $WSname.zip $9 +cp $WSname.zip ${11}