view redelacSticsInputGenerator.bash @ 9:2a6d7d053ba7 draft

"planemo upload for repository https://forgemia.inra.fr/redelac commit adcac73e150f1f821b4b7f7673a490dc0fadc936"
author siwaa
date Mon, 25 Sep 2023 16:25:51 +0000
parents 0625e6a639ea
children f707c2fb725b
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cp -r /home/rstudio/JavaSTICS-1.5.1-STICS-10.0.0 . &&
rm -rf JavaSTICS-1.5.1-STICS-10.0.0/config &&
cp -r $4/config JavaSTICS-1.5.1-STICS-10.0.0 &&
unzip -q $5 -d TMP &&
export WSname=$(ls TMP) &&
mv TMP/* JavaSTICS-1.5.1-STICS-10.0.0/WS &&
cp JavaSTICS-1.5.1-STICS-10.0.0/config/param_gen.xml JavaSTICS-1.5.1-STICS-10.0.0/WS &&
cp JavaSTICS-1.5.1-STICS-10.0.0/config/param_newform.xml JavaSTICS-1.5.1-STICS-10.0.0/WS &&
unzip -q $6 -d TMPbis &&
mv TMPbis/*/* JavaSTICS-1.5.1-STICS-10.0.0/WS &&
cp $7 JavaSTICS-1.5.1-STICS-10.0.0/WS/USMs.csv &&
cp $8 JavaSTICS-1.5.1-STICS-10.0.0/WS/Tec.csv &&
cp $9 JavaSTICS-1.5.1-STICS-10.0.0/WS/Ini.csv &&
cp ${10} JavaSTICS-1.5.1-STICS-10.0.0/WS/Station.csv &&
cd JavaSTICS-1.5.1-STICS-10.0.0 &&
Rscript --verbose $4/redelacSticsInputGenerator.R $1 $2 $3 &&
rm WS/1* &&
mv WS $WSname &&
zip -q -r $WSname $WSname &&
cp $WSname.zip ${11}