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"planemo upload for repository https://forgemia.inra.fr/redelac commit 9c5802d9b947f1e59bd5df610ebe5dfc89745be6"
author | siwaa |
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date | Tue, 23 Jan 2024 18:51:34 +0000 |
parents | c7d424481b03 |
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name;definition;unit;name in code;english name;who A_LAI;shapes of the senescence curve;SD;;;DR absodrp;variable relecting the nitrogen status of the crop from the starting date of filling of harvested organs;SD;absodrp;;FF absz;actual N uptake in each elementary soil layer;kg N ha-1 day-1;absz;;FF albsol;albedo of the soil;SD;albsol;;ML alloresp;daily coeffiscient of allocation of remobilised biomass between structural and reserves pools of perennial organs;SD;alloresp;;LS amplsurf;daily thermal amplitude at the surface;degreesC;amplsurf;;JL amplz;daily thermal amplitude;degreesC;amplz;;JL azorac;amount of mineral nitrogen in the rooting zone;kg N ha-1;azorac;;FF B_LAI;shapes of the growth curve;SD;;;DR bpsisol;retention curve parameter 2;SD;bpsisol;;JL CCper;carbon concentration in perennial organs;g C kg-1 DM;CCper;;FF CCrac;carbon concentration in roots;g C kg-1 DM;CCRac;;FF coeflev;ratio between the emerged and the germinated density depending on non-optimal water content and temperature conditions;SD;coeflev (l.268 de Stics_levee.f90);;DR coeflevb;ratio between the emerged and the germinated density depending on the crust layer;SD;coeflev (l.270 de Stics_levee.f90);;ML concN;mean nitrate concentration in each elementary soil layer;kg N ha-1 mm-1 water;concN;;FF conv;daily convection flow of N in each elementary soil layer;kg N ha-1 day-1;conv;;FF crust;indicator of crust conditions at the soil surface;0/1;null;;DR CsurNper;C/N ratio of the storage organs;SD;;;DR CsurNresid;C/N ratio of falling leaves;SD;CsurNresid;CN_ratio_falling_leaves;DR CsurNressuite;C/N ratio of calculated crop residue for the next crop;SD;CsurNressuite;CN_ratio_residu_returning_in_soil;DR CsurNsol;C to N ratio of soil throughout time;SD;CsurNsol;;FF cuh;chilling hourly units;degrees C;cuh;;DR cumoffrN;sum of nitrogen soil supply over the profile;kg N ha-1;cumoffrN;sum_soil_N_supply;DR da;bulk soil density;g cm-3;daz??;bulk_soil_density;AM DELTABSO;nitrogen dependant biomass growth;t ha-1 day-1;?;;AM variable deltai_1;daily increase of the green leaf index for determinate crops;m2 leaf m-2 soil;?;;AM deltai_2;daily increase of the green leaf index for indeterminate crops;m2 leaf m-2 soil;?;;AM deltai_dens; density component of deltai; plant m-2; ??; density_component_deltai;AM deltai_dev;phasic development component of deltai;m2 plant-1 degree.day-1;;deltai_dev;AM deltai_stress;stress component of deltai;SD;;deltai_stress;AM deltai_T;thermal component of deltai;degree.days;;deltai_T;AM deltaimax;maximum increase in leaf expansion;m2 leaf m-2 soil;?;;AM DELTAMSRESEN;senescence rate of residual dry matter after forage crop cutting;t DM ha-1 day-1;?;;AM deltat;gradient of the relationship between saturation pressure and temperature;mbars;deltat;saturation_deficit;DR deltatemp;difference in mean daily temperature inside and outside a greenhouse;degrees C;deltatemp;;ML deltaz_stress;Stress component of deltaz;SD;??;stress_component_deltaz;AM deltaz_T;Thermal component of deltaz;cm day-1;??;thermal_component_deltaz;AM densiteger;density of germinated plants;plants.m-2;densiteger;;ML densitelev;density of emerged plants;plants.m-2;densitelev;;ML diff;diffusion flow of N in each elementary soil layer;kg N ha-1 day-1;diff;;FF difNe;effective diffusion coefficient of nitrate in soil;cm2 day-1;diff;;FF dltafv;daily biomass partitioning to the structural part of green leaves;t DM ha-1;dltafv;;LS dltamsrac;daily root gowth;t DM ha-1 day-1;dltamsrac;;FF dltamsracmort;daily dead root biomass on the root depth;t DM ha-1 day-1;dltamsracmort;dailydeadrootbiomass?;DR dltaQCracmort; Cumulative amount of C lost by dead roots over the soil profile;kg N ha-1 day-1;;;DR dltaQNracmort; Cumulative amount of N lost by dead roots over the soil profile;kg N ha-1 day-1;;;DR dltaremobsen;daily biomass remobilised during leaves senescence;t DM ha-1;dltaremobsen;;LS dltares;daily biomass partitioning to the temporary reserves;t DM ha-1;deltares;;LS dltaresper;daily biomass remobilised from temporary reserves allocated to perennial organs reserves;t DM ha-1;dltaresper;;LS dltarestemp;daily biomass remobilised from temporary reserves to perennial organs;t DM ha-1;dltarestemp;;LS dltarestemp2;daily biomass remobilised from temporary reserves to perennial organs;t DM ha-1;dltarestemp;;LS dltat;daily biomass partitioning to the structural part of stems;t DM ha-1;dltat;;LS dos;saturation deficit within the canopy;mbars;dos;;ML dpHvol;increase of soil pH after manure application;SD;dpHvol;;FF dpHvolm;maximum pH increase following the application of slurry (taking into account the amount of inorganic N applied) ;SD;dpHvolm;;FF drlsenf;length of dead fine roots in layer iz on day n;cm cm-2 soil;;;DR drlseng;length of dead coarse roots in layer iz on day n;cm cm-2 soil;;;DR dsat;air saturation deficit;mbars;dsat;air_saturation_deficit;DR DURAGE;natural lifespan of leaves;Q10;?;;AM DURVIEFv;maximal lifespan of an adult leaf;Q10;?;;AM DURVIEIp;lifespan of a young leal (at the AMF stage) expressed as a proportion of DURVIEF;SD;?;;AM E;snow compaction parameter;mm mm-1 day-1;E;E_snow_compaction;DR Edirectm;maximum value of Edirect;mm day-1;Edirectm;;ML effN;Nitrogen use efficiency;SD;effN;NUE;DR elong;elongation of the coleoptile;cm;elong;;DR emissa;emissivity of the atmosphere;0-1;emissa;;ML epz;daily transpiration flow in each elementary soil layer;mm day-1;epz;;FF ePT(t);potential evapotranspiration according to Priestley-Taylor formula;mm day-1;pas dans le code;;ML estimet;evapotranspiration estimated from the water balance for the previous day and the climatic demand of the day in case of greenhouse;mm day-1;estimet;;ML esz;evaporation soil profile;mm day-1 cm-1;esz;;ML etmax;maximum value of daily evaporation flux;W m-2;etmax;;ML etmin;minimum value of daily evaporation flux;W m-2;etmin;;ML FGELJUV;frost index acting on LAI during the juvenile phase;SD;?;;AM fgellev;frost index acting on plant density during the plantlet phase;SD;fgellev;;DR FGELVEG;frost index acting on LAI during the vegetative phase;SD;?;;AM fh;moisture factor on humus and residue decomposition rates;SD;fh;;FF fluxrac;potential N uptake rate in each elementary soil layer;kg N ha-1 day-1;fluxrac;;FF fluxsol;daily soil N supply in each elementary soil layer;kg N ha-1 day-1;fluxsol;;FF FPH;soil pH effect on the volatilisation;pH;volmax;volatilisation_pH_reduction;DR Fr;ratio of rain in repartition between rain and snow rain;0-1;?;;DR fracinsol;insolation fraction;0-1;fracinsol;;ML fruis;proportion of run-off water above the activation threshold (pminruis);SD;fruis;;ML Fs;ratio of snow in repartition between rain and snow rain;0-1;fs;;DR ftempremp;thermal stress index as a function of temperature using cardinal temperatures (tminremp et tmaxremp);0-1;ftempremp;;PL FsNH3;potential ammonia volatilization rate;microgram m-2 day-1;FsNH3;;FF fth;temperature factor on humus mineralisation rate;SD;fth;;FF ftr;temperature factor on residue decomposition rate;SD;ftr;;FF gamma;psychrometrc constant;mb degreeC-1;gamma;gamma_psychometric_constant;DR gmax;maximum value of daily soil heat flux;W m-2;GMAX;;ML gmin;minimum value of daily soil heat flux;W m-2;GMIN;;ML grainsnb;number of grains per square meter;grains m-2;??;grainsnb;BD ha;residual soil water content in the sed bed;mm water cm soil-1;ha;;ML HB;soil layer between the seedbe and the root front;cm;null;;DR hn;wilting point mean in the seed bed;mm water cm soil-1;hn;;DR hucc;elementary layer soil water content at field capacity;mm water cm soil-1;hucc;;JL HCUM;available water over the rooting zone;mm water g soil-1 x 100;pas dans le code;;ML humin;elementary layer soil water content at wilting point;mm water cm soil-1;humin;;JL humirac;influence of soil water content on germination and root growth;SD;humirac;soil_water_content_germination_roor;AM humsol;soil moisture;mm water cm soil-1;humsol;;DR hur;microporosity elementary layer soil water content;mm water cm soil-1;hur;;JL hx;mean water content at field capacity in the sed bed;mm water cm soil-1;hx;;DR ilets;date of the plantlet stage;days;ilets;;DR IMB;date of the beginning of seed moistening;days;null;;DR INNI;instantaneous nitrogen index;SD;?;;AM variable jvi;vernalizing contribution of a given day;nb days;;;ML K;melting rate;mm degrees C-1 day-1;K;K_snow;DR K_LAI;maximal LAI produced;m2 m-2;;;DR K2;actual mineralisation rate of humus;day-1;K2;;FF K2hum;potential mineralisation rate of humus;day-1;K2hum;;FF kgdiffus;proportion of diffusive radiation reaching the soil;SD;?;;AM kgdirect;proportion of direct radiation reaching the soil;SD;?;;AM kh;coefficient of heat transfer in the cold shelter;W m-2 K-1;kh;;ML ks;coefficient of energy losses between the outside and inside of the shelter;W m-2 K-1;ks;;ML L;latent heat of vaporization;MJ kg-1;L;latent_heat;DR laieffcum;LAI removed;SD;laieffcum;LAI_removed;DR lairognecum;sum of topped leaf area index ;m2 m-2;lairognecum;sum_lai_topped;DR longsperacf;specific fine root length;cm g-1;;;DR + AM Variable calculated in chap root longsperacg;specific coarse root length;cm g-1;;;DR + AM Variable calculated in chap root lracsentot; total length of senescent roots;cm root cm-2 soil; lracsentot; total_death_root;AM devrait etre dans variable lracsenz; death root length density at depth z;cm root cm-3 soil; lracsenz; death_root_length_density_z;AM unite a verifier lracz;efficient root length density;cm root cm-3 soil;??;efficient_root_length_density;AM M;snow in the process of melting;mm day-1;M;M_melting_snow;DR MASECABSO;biomass accounting for nitrogen absorption;t DM ha-1;?;;AM variable mouill;water retained on the foliage;mm;mouill;water_retained_by_foliage;DR mouillmulch;water retained by the vegetal mulch;mm;mouillmulch;;ML Mrf;liquid water in the snow cover in the process of refreezing;mm day-1;Mrf;M_liquid_snow;DR msracmort;dead root biomass on the root depth;t ha-1;deadrootbiomass?;;DR nbgraingel; number of frozen grains per square meter;grains m-2;nbgraingel;;PL nbgrains; number of grains per square meter;grains m-2;nbgrains;;PL nbjgrauto;days of autotrophy for a moistened seed;days;nbjgrauto;;ML nbjhumec;maximal period that seedcan be in a moist status without seed death occurs ;days;nbjhumec;;DR NH3g;ammonia concentration in the gaseous soil phase;mol l-1;NH3g;;FF NH3surf;ammonia concentration at the soil surface;microgram N m-3;NH3surf;;FF nit;amount of NO3-N in an elementary layer; kg N ha-1;nit;;JL nodn;coefficient used to take into account the effect of the soil mineral N content on the potential N fixation;SD;nodn;;FF Nvolatorg;volatilizable NH4;kg N ha-1;Nvolatorg;;FF Nvolorg;actual ammonia volatilization rate;kg N ha-1 day-1;Nvolorg;;FF devrait etre ds variables de sortie offrN;mineral N available for root uptake in each elementary soil layer;kg N ha-1;offrN;;FF pgraingel; weight of frozen grains per square meter;g m-2;pgraingel;;PL pgrain; weight of grains per square meter;g m-2;pgrain;;PL pHvol;soil surface pH varying after organic residue application (such as slurry);SD;pHvol;;FF propfixpot;phenology-dependent coefficient used to calculate potential N fixation;SD;propfixpot;;FF propvolat;proportion of the volatilizable N fraction of the residue;SD;propvolat;;FF ps;density of the snow cover;kg m-3;ps_in;ps_snow_density;DR psisol;soil potential of the elementary layer;Mpa;psisol;;JL psisols;retention curve parameter 1;MPa;psisols;;JL QNplantule;amount of nitrogen in the plantlet;kg N ha-1;null;;DR QNplmax;maximal amount of N possible in the crop;kg N ha-1;QNplmax;maximal_N_in_plant;DR raa;aerodynamic resistance between the canopy and the reference height of weather measurements;s m-1;raa;;FF raamax;maximum daily value of the aerodynamic resistance between the cover et the reference level zr;W m-2;raamax;;ML raamin;minimum daily value of the aerodynamic resistance between the cover et the reference level zr;W m-2;raamin;;ML racinepsi;efficient root length density participating in predawn potential, located in the moist layers (PSISOL < -1.5 Mpa), else =0.;cm root cm-3 soil;racinepsi;root_psi;JL un moment racinepsi=lracz comprend pas rac;resistance of the canopy boundary layer;s m-1;rac;;ML Ratm;atmospheric component of the long wave radiation;MJ m-2 day-1;Ratm;;ML rc;resistance of canopy;s m-1;?;;ML rdiffus;diffusive radiation;MJ m-2 day-1;?;;AM rdirect;direct radiation;MJ m-2 day-1;?;;AM rdroit;radiation not intercepted by the crop;MJ m-2 day-1;rdroit;;AM reprac;underground/total biomass partitioning coefficient;SD; reprac; root_over_total_biomass_partitioning_coefficient;AM rgex;extraterrestrial radiation;MJ m-2 day-1;rgex;;ML Rglo;long wave radiation;MJ m-2 day-1;RGLO;;ML rgmax;maximum daily value of the global radiation;W m-2;rgmax;;ML rgmin;minimum daily value of the global radiation;W m-2;rgmin;;ML rl;root length density at depth z;cm root cm-3 soil; rl; root_length_density_z;AM devrait etre dans variable rlf;length of fine roots in layer iz on day n;cm cm-2 soil;;;DR rlg;length of coarse roots in layer iz on day n;cm cm-2 soil;;;DR rlj_dens; plant density component of rlj;plant m-2; ??; plant_density_component_rlj;AM rlj_dev; plant density component of rlj;m root plant-1 degree-day-1; ??; plant_density_component_rlj;AM rlj_stress; stress component of root length growth rlj;SD; ??; stress_component_rlj;AM rlj_T; thermal component of root length growth rlj;degreeC day-1; ??; thermal_component_of_rlj;AM rljfront; root length growth at the root front; m root m-2 day-1; ??; rlj_at_root_front;AM rnet_PE;Net radiation for Brunt formula;MJ m-2;rnet;net_radiation;DR rnet_PT;Net radiation for Priestley-Taylor evapotranspiration calculation;MJ m-2;rnet dans calceeq;net_radiation;DR rnetmax;maximum value of daily net radiation;W m-2;rnetmax dans caltcult.f90;;ML rnetmin;minimum value of daily net radiation;W m-2;rnetmin dans caltcult.f90;;ML rnetP;net radiation affecting the crop;MJ m-2;;;ML Rsol;surface comopnent of the long wave radiation;MJ m-2 day-1;Rsolglo;;ML RsRso;total to extraterrestrial radiation ratio;SD;RsRso;;AM rtransmis;radiation transmistted through the crop;MJ m-2 day-1;rtransmis;;AM Sdry;water in solid state in the snow cover;mm;Sdry;;PL S_WE;ratio between the snow water equivalent;mm;;;DR Swet;water in liquid state in the snow cover;mm;Swet;;PL sat;macroporosity elementary layer soil water content;mm water cm soil-1;sat;;JL SB;seed bed;cm;null;;DR sbv;specific surface area of biomass;cm2 g-1;sbvmax;specific_surface_area_biomass;DR sbvmax;leaf expansion allowed per unit of biomass accumulated;cm2 g-1;?;;AM sla;maximum SLA (specific leaf area) of green leaves;cm2 g-1;slamax;maximum_specific_leaf_area;DR somger;growing degree-days from planting in the seed bed;degrees C;somger;;DR SOMSEN;current thermal time for senescence;Q10;?;;AM ST_LAI;growing degree-days since emergence;degreesC;;;DR stdebsenrac_p; life span of roots;degreeC day-1; ??; life_span_root; AM devrait etre dans parameters SURFAO;fraction of surface in the shade;SD;?;;AM SURFAS;fraction of surface in the sun;SD;?;;AM surfouvre;proportion of vents related to the total surface area of the greenhouse;0-1;surfouvre;;ML tair;mean air temperature (measured );degreesC;tairveille;mean_air_temperature;DR TDEW;dewpoint temperature;degreesC;TDEW;;ML teta;available water content in the root zone;cm3 water cm-3 soil;?;;AM variable tetsen;threshold soil water content accelering senescence;cm3 water cm-3 soil;?;;AM parameter? tetstomate and teturg designed as variable? or parameter? TF_LAI;growing degree-days for the point of inflexion of the complete senescence;degrees C;;;DR TI_LAI;growing degree-days for the point of inflexion of the growth curve ;degrees C;;;DR tmin;minimum temperature ;degreesC;tmin(n);min_air_temperature;DR tnh;normalized time (day) for humus mineralization;SD;tnh;;FF tpm;vapour pressure in air;mbars;tpm;;ML TRECOUVMAXp;proportion of the soil covered by isolated plant;SD;?;;AM tsol;soil temperature ;degrees C;tsol;Soil_temp;DR TURSAL;mean water stress TURFAC experienced since emergence;SD;?;;AM TVAR;saturating vapour pressure as a function of temperature;mbars;TVAR;;ML Vabs;specific N absorption capacity of the roots;micromole N h-1 cm-1 root;Vabs;;FF vabsmoy;Nitrogen uptake rate;Kg N ha-1 day-1;vabsmoy;Nitrogen_uptake_rate;DR VABSN;nitrogen accumulation rate in the plant (uptake and fixation);kg N ha-1 day-1;?;;AM variable wfps;water filled pore space;SD;wfps;;BM wfpscc;water filled pore space at fied capacity;SD;wfpscc;;BM wsat;total porosity;SD;wsat;;JL XMULCH;thickness of mulch created by evaporation from the soil;cm;pas dans le code;;ML z0;crop roughness;m;z0;;ML z0s;soil or understorey crop roughness;m;z0solnu;;ML zdemi;root depth that ensures at least an extraction near the soil surface of 20% of the water available;cm; zdemi; threshold_extraction_20%_water_available;AM znonli;root depth if no obstacle;cm; znonli; root_depth_without_obstacle;AM code_diff_rac;1 two types of roots (fine and coarse roots or 2 a single mean type of root;SD;codediffroot;;AM voir si c’est bien ce nom parameter codeinstal;Technical code to describe either seedling or already installed crop;SD;codeinstal;;AM parameter nhet;number of days of heterotrophy during germination;day;nhet;;AM calculé dans chap root newrac;root length growth thanks to seed reserve remobilization during germination;m day-1;newrac;;AM variable calculées dans chap root dis;A voir avec Nicolas;?;dis;;AM variable calculées dans chap root debsenracf;thermal time units defining the begining of root senescence for fine roots;degreeC day-1;debsenracf;;AM parameter chap root debsenracg;thermal time units defining the begining of root senescence for coarse roots;degreeC day-1;debsenracg;;AM parameter chap root drliz;daily root length emission per elementary layer;cm root cm-3 soil;drliz;;AM variable calculées dans chap root Wi;index of soil water availability (0-1);SD;;;DR aevap;soil evaporation parameter combining climatic and soils aspects;mm;;;DR EVAP0;accumulation of evaporative fluxes (esol, Emd, emulch);mm;;;DR RNETP1;net radiation affecting the crop (use for direct evaporation);MJ m-2 day-1;;;DR RNETP2;net radiation affecting the crop (use for transpiration);MJ m-2 day-1;;;DR dh;displacement height;m;;;DR hmin;water content at permanent wilting point of macro layer;%weight;;;DR vnit;nitrification rate;mg N kg-1 day-1;vnit;;FF vnitpot;potential nitrification rate;mg N kg-1 day-1;vnitpot;;FF theta_sat;volumic soil water content at saturation;cm3 cm-3;theta_sat;;FF devjour;daily development rate;ND;devjourfr;;PL k;growth compartment;ND;i;;PL croifruit;fruit growth;g m-2;croifruit;;PL teaugrain;Water content of (harvested) organs;g g-1;teaugrain;;PL dltazo;daily increase of grain nitrogen content;kgN.ha-1.day-1;dltazo;;PL-BD potcroifruit;potential growth of a fruit;g.fruit-1.day-1;potcroifruit;;BD dfr;fruit development stage of each age class;SD;dfr;;BD mafraisfeuille;leaf fresh matter;t.ha-1;mafraisfeuille;;BD mafraistige;structural stem fresh matter;t.ha-1;mafraistige;;BD mafraisres;reserve fresh matter;t.ha-1;mafraisres;;BD resperenne0;initial biomass reserve;t.ha-1;resperenne0;;BD sum_eos;sum of daily maximum evaporation flux;mm;;;DR z;soil elementary layer of 1 cm;cm;z;;DR