Mercurial > repos > siwaa > redelac_stics_s
view redelacSticsSimulator.R @ 5:fa8e742b197b draft
"planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/e5d2c43e9169b2209fd3267e9eb09a9593f55436/tools/REDELACSticsSimulator commit e5d2c43e9169b2209fd3267e9eb09a9593f55436-dirty"
author | siwaa |
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date | Mon, 21 Aug 2023 15:47:50 +0000 |
parents | 70ae7516e925 |
children | 41f652e6616f |
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library(SticsRFiles) library(SticsOnR) library(parallel) library(doParallel) library(readxl) workspace <- paste0(getwd(), "/WS") javastics_path <- getwd() default_config_path <- paste0(javastics_path, "/config") txt_path <- paste0(getwd(), "/WS/txt_files") print("==================================") print(paste0("Cores=", detectCores())) print(paste0("javastics=", javastics_path)) print(paste0("ws=", workspace)) print(paste0("out_dir=", txt_path)) print("==================================") # List of successive USMs successive_usms_file <- ("successionPlan.csv") successive_usms_tab <- read.csv(file = file.path(workspace, successive_usms_file), sep =";") #no_cores <- detectCores() - 1 #no_cores <- 10 #cl <- makeCluster(no_cores) #registerDoParallel(cl) result <- list() #result <- foreach(i=1:nrow(successive_usms_tab), # .packages = c("SticsRFiles", "SticsOnR") ) %dopar% { for(i in 1:nrow(successive_usms_tab)) { nusms <- as.numeric(successive_usms_tab[i,2]) vec <- as.character(successive_usms_tab[i,c(3:(2+nusms))]) list_successive_usms <- list(vec) sim_options <- stics_wrapper_options(javastics = javastics_path, stics_exe = paste0(javastics_path,"/bin/stics_modulo"), workspace = txt_path, verbose = TRUE, successive = list_successive_usms) list_usms <- vec singleResult = stics_wrapper(model_options = sim_options, situation = list_usms) result = append(result, list(singleResult)) } #stopCluster(cl) for (i in 1:nrow(successive_usms_tab)) { #i=1 if (i == 1) { simPCP <- result[[i]] } else { simPCP$sim_list <- c(simPCP$sim_list, result[[i]]$sim_list) } } save(simPCP, file = "results.RData")