<tool id="redelacSticsSimulator" name="redelacSticsSimulator" version="1.0.6">
  <description>to run sequences paralelly [Stics-10.0.0]</description>
  <requirements>
    <container type="singularity">docker://registry.forgemia.inra.fr/redelac/redelac-toolbox/sticsrpacks:0faa63e7838a2b86369026bf2e628842d7af9863</container>
  </requirements>
  <command detect_errors="aggressive">
    <![CDATA[ 
              bash $__tool_directory__/redelacSticsSimulator.bash ${parallel} \${GALAXY_SLOTS:-4} ${Scenario} $__tool_directory__ ${Workspace} ${SuccessionPlan} ${SimulatedWorkspace} ${SimulationResults} ${compress}
     ]]>
  </command>
  <inputs>
    <param name="Workspace" type="data" format="zip" label="Select a stics Workspace(zip file)"/>
    <param name="SuccessionPlan" type="data" format="csv" label="Select a plan of succession (csv)"/>
    <param name="Scenario" type="text" value="scenarioName" label="Scenario Name"/>
    <param name="parallel" type="boolean" checked="true" truevalue="parallel" falsevalue="sequential"/>
    <param name="compress" type="boolean" checked="true" truevalue="-6" falsevalue="-0"/>
  </inputs>
  <outputs>
    <data format="zip" name="SimulatedWorkspace"
          label="SticsSimulatedWorkspace">
    </data>
    <data format="zip" name="SimulationResults"
          label="SticsOnResults">
    </data>
  </outputs>
  <tests>
    <test>
      <param name="parallel" value="true" ftype="boolean" />
      <param name="Workspace" value="input/rotx10.zip" ftype="zip" />
      <param name="SuccessionPlan" value="input/listeUSMsExp10.csv" ftype="csv" />    
      <output name="SimulationResults" ftype="zip" >
	<assert_contents>
	  <has_archive_member path="analyse_simulations_STICS\/1\/2\/report-2-806_1893-637_NGC1-scenarioName.csv">
	    <has_text text="806_1893-637_NGC1-1-2-BT-NA-1973-BT" />
	    	  </has_archive_member>
	</assert_contents>	  
      </output>
    </test>
    <test>
      <param name="compress" value="false" ftype="boolean" />
      <param name="parallel" value="true" ftype="boolean" />
      <param name="Workspace" value="input/rotx10.zip" ftype="zip" />
      <param name="SuccessionPlan" value="input/listeUSMsExp10.csv" ftype="csv" />    
      <output name="SimulationResults" ftype="zip" >
	<assert_contents>
	  <has_archive_member path="analyse_simulations_STICS\/1\/2\/report-2-806_1893-637_NGC1-scenarioName.csv">
	    <has_text text="806_1893-637_NGC1-1-2-BT-NA-1973-BT" />
	    	  </has_archive_member>
	</assert_contents>	  
      </output>
    </test>
    <test>
      <param name="parallel" value="false" ftype="boolean" />
      <param name="Workspace" value="input/rotx10.zip" ftype="zip" />
      <param name="SuccessionPlan" value="input/listeUSMsExp10.csv" ftype="csv" />    
      <output name="SimulationResults" ftype="zip" >
	<assert_contents>
	  <has_archive_member path="analyse_simulations_STICS\/1\/2\/report-2-806_1893-637_NGC1-scenarioName.csv">
	    <has_text text="806_1893-637_NGC1-1-2-BT-NA-1973-BT" />
	    	  </has_archive_member>
	</assert_contents>	  
      </output>
    </test>
  </tests>
  <help>
*The usage of this tool is restricted to the user of the stics_authorized group.*

*To be granted, apply to the Project Stics Team and then request to SIWAA*

Documentation
-------------
A tool to simulate stics rotation paralelly

Credits
-------
-  Wrapped Tool Author: https://www6.paca.inrae.fr/stics_eng/About-us/Project-Stics-Team
-  Stics Site: https://www6.paca.inra.fr/stics_eng
-  Galaxy Tool Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
-  Copyright: INRAE
  </help>
</tool>