Mercurial > repos > siwaa > redelac_stics_t

annotate redelacSticsTool.xml @ 13:31ce8e8ceae4 draft

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"planemo upload for repository https://forgemia.inra.fr/redelac commit e8cd53d378923360586f50286df6f1e55706cf8f"
author siwaa
date Wed, 03 Dec 2025 09:58:59 +0000
parents 88e12ccec1b0
children 30d7b0210581
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1 <tool id="redelacSticsTool" name="redelacSticsTool" version="1.0.15">
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2 <description>to run Stics for REDELAC</description>
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3 <requirements>
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4 <container type="singularity">docker://registry.forge.inrae.fr/redelac/redelac-toolbox/sticsrpacks:4bf27fdaedcc1ffe10a6017da2255f1d6e751796</requirements>
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5 <command detect_errors="aggressive">
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6 <![CDATA[
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7 #if $additional:
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8 additional=${additional} &&
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9 #else
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10 additional=noAdditionalPlantOrConfig &&
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11 #end if
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12 #if $REDELAC.optim == 'optim':
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13 parallel=${$REDELAC.parallel} &&
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14 #else
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15 parallel=sequential &&
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16 #end if
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17 bash $__tool_directory__/redelacSticsTool.bash ${REDELAC.optim} \${parallel} \${GALAXY_SLOTS:-4} $__tool_directory__ ${Workspace} ${Climat} ${USMs} ${Tec} ${Ini} ${Station} \${additional} ${GeneratedWorkspace} ${compress} ${outputsOnly} ${Scenario} ${SimulationResults} ${SuccessionPlan}
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18 ]]>
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19 </command>
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20 <inputs>
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21 <param name="Scenario" type="text" value="scenarioName" label="Scenario Name"/>
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22 <param name="Workspace" type="data" format="zip" label="Select a stics Workspace (zip file)"/>
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23 <param name="Climat" type="data" format="zip" label="Select a climat scenario (zip file)"/>
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24 <param name="USMs" type="data" format="csv" label="Select the USMs sheet (csv)"/>
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25 <param name="Tec" type="data" format="csv" label="Select the Tec sheet (csv)"/>
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26 <param name="Ini" type="data" format="csv" label="Select the Ini sheet (csv)"/>
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27 <param name="Station" type="data" format="csv" label="Select the Station sheet (csv)"/>
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28 <param name="additional" type="data" optional="true" format="zip" label="[optional] Select a zipped archive with folder plant (and or) config (zip file)"/>
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29 <param name="SuccessionPlan" type="data" format="csv" label="Select a plan of succession (csv)"/>
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30 <conditional name="REDELAC">
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31 <param name="optim" type="boolean" checked="true" truevalue="optim" falsevalue="noptim" label="To speed up the xml2txt conversion process by generating file only once"/>
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32 <when value="optim">
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33 <param name="parallel" type="boolean" checked="true" truevalue="parallel" falsevalue="sequential" label="To parallelize the xml2txt conversion process" />
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34 </when>
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35 <when value="noptim">
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36 </when>
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37 </conditional>
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38 <param name="outputsOnly" type="boolean" checked="true" truevalue="yes" falsevalue="no" label="To get results only"/>
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39 <param name="compress" type="boolean" checked="true" truevalue="-6" falsevalue="-0" label="To compress or not the output(compressing does slow down the job)"/>
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40 </inputs>
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41 <outputs>
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42 <data format="zip" name="SimulationResults"
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43 label="SticsOnResults">
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44 </data>
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45 <data format="zip" name="GeneratedWorkspace"
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46 label="GeneratedWorkspace$">
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47 <filter>outputsOnly == False</filter>
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48 </data>
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49 </outputs>
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50 <tests>
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51 <test>
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52 <param name="compress" value="false" ftype="boolean" />
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53 <param name="outputsOnly" value="false" ftype="boolean" />
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54 <param name="optim" value="true" ftype="boolean" />
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55 <param name="parallel" value="true" ftype="boolean" />
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56 <param name="Workspace" value="input/rot1_3.zip" ftype="zip" />
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57 <param name="Climat" value="input/flat_cnrm-cm5-aladin63_rcp2.6.zip" ftype="zip" />
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58 <param name="USMs" value="input/USMsSheetExp.csv" ftype="csv" />
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59 <param name="Tec" value="input/TecSheet.csv" ftype="csv" />
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60 <param name="Ini" value="input/IniSheet.csv" ftype="csv" />
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61 <param name="Station" value="input/StationsSheetExp.csv" ftype="csv" />
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62 <param name="additional" value="input/conf_rot1_3.zip" ftype="zip" />
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63 <param name="SuccessionPlan" value="input/successionsSheetExp.csv" ftype="csv" />
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64 <output name="GeneratedWorkspace" ftype="zip" >
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65 <assert_contents>
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66 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-NA-1973-PP1\/new_travail.usm">
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67 <has_text text="806_1893-637_NPP1-1-3-PP-NA-1973-PP1" />
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68 </has_archive_member>
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69 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-NA-1974-PP\/new_travail.usm">
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70 <has_text text="806_1893-637_NPP1-1-3-PP-NA-1974-PP" />
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71 </has_archive_member>
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72 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-NA-1975-PP\/new_travail.usm">
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73 <has_text text="806_1893-637_NPP1-1-3-PP-NA-1975-PP" />
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74 </has_archive_member>
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75 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-1976-PPorg\/new_travail.usm">
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76 <has_text text="806_1893-637_NPP1-1-3-PP-ref-1976-PPorg" />
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77 </has_archive_member>
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78 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-1977-PP\/new_travail.usm">
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79 <has_text text="806_1893-637_NPP1-1-3-PP-ref-1977-PP" />
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80 </has_archive_member>
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81 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2000-PPorg\/new_travail.usm">
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82 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2000-PPorg" />
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83 </has_archive_member>
9
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84 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2001-PP\/new_travail.usm">
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85 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2001-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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86 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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87 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2002-PP\/new_travail.usm">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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88 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2002-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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89 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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90 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2003-PPorg\/new_travail.usm">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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91 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2003-PPorg" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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92 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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93 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2004-PP\/new_travail.usm">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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94 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2004-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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95 </has_archive_member>
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96 </assert_contents>
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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97 </output>
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98 <output name="SimulationResults" ftype="zip" >
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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99 <assert_contents>
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100 <has_archive_member path="analyse_simulations_STICS\/1\/3\/outputs-3-806_1893-637_NPP1-scenarioName.rds">
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101 <has_size value="0" negate="true" />
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102 </has_archive_member>
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103 <has_archive_member path="analyse_simulations_STICS\/1\/3\/outputs-3-806_1893-638_NPP1-scenarioName.rds">
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104 <has_size value="0" negate="true" />
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105 </has_archive_member>
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106 <has_archive_member path="analyse_simulations_STICS\/1\/3\/report-3-806_1893-637_NPP1-scenarioName.csv">
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107 <has_n_lines n="133" />
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108 </has_archive_member>
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109 <has_archive_member path="analyse_simulations_STICS\/1\/3\/report-3-806_1893-638_NPP1-scenarioName.csv">
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110 <has_n_lines n="133" />
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111 </has_archive_member>
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112 </assert_contents>
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113 </output>
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114 </test>
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115 <test>
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116 <param name="compress" value="false" ftype="boolean" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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117 <param name="outputsOnly" value="false" ftype="boolean" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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118 <param name="optim" value="true" ftype="boolean" />
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119 <param name="parallel" value="false" ftype="boolean" />
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120 <param name="Workspace" value="input/rot1_3.zip" ftype="zip" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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121 <param name="Climat" value="input/flat_cnrm-cm5-aladin63_rcp2.6.zip" ftype="zip" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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122 <param name="USMs" value="input/USMsSheetExp.csv" ftype="csv" />
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123 <param name="Tec" value="input/TecSheet.csv" ftype="csv" />
9
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124 <param name="Ini" value="input/IniSheet.csv" ftype="csv" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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125 <param name="Station" value="input/StationsSheetExp.csv" ftype="csv" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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126 <param name="additional" value="input/conf_rot1_3.zip" ftype="zip" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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127 <param name="SuccessionPlan" value="input/successionsSheetExp.csv" ftype="csv" />
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128 <output name="GeneratedWorkspace" ftype="zip" >
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129 <assert_contents>
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130 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-NA-1973-PP1\/new_travail.usm">
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131 <has_text text="806_1893-637_NPP1-1-3-PP-NA-1973-PP1" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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132 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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133 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-NA-1974-PP\/new_travail.usm">
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134 <has_text text="806_1893-637_NPP1-1-3-PP-NA-1974-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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135 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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136 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-NA-1975-PP\/new_travail.usm">
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137 <has_text text="806_1893-637_NPP1-1-3-PP-NA-1975-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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138 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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139 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-1976-PPorg\/new_travail.usm">
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140 <has_text text="806_1893-637_NPP1-1-3-PP-ref-1976-PPorg" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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141 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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142 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-1977-PP\/new_travail.usm">
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143 <has_text text="806_1893-637_NPP1-1-3-PP-ref-1977-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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144 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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145 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2000-PPorg\/new_travail.usm">
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146 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2000-PPorg" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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147 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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148 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2001-PP\/new_travail.usm">
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149 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2001-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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150 </has_archive_member>
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151 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2002-PP\/new_travail.usm">
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152 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2002-PP" />
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153 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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154 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2003-PPorg\/new_travail.usm">
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155 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2003-PPorg" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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156 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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157 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2004-PP\/new_travail.usm">
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158 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2004-PP" />
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159 </has_archive_member>
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160 </assert_contents>
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161 </output>
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162 <output name="SimulationResults" ftype="zip" >
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163 <assert_contents>
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164 <has_archive_member path="analyse_simulations_STICS\/1\/3\/outputs-3-806_1893-637_NPP1-scenarioName.rds">
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165 <has_size value="0" negate="true" />
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166 </has_archive_member>
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167 <has_archive_member path="analyse_simulations_STICS\/1\/3\/outputs-3-806_1893-638_NPP1-scenarioName.rds">
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168 <has_size value="0" negate="true" />
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169 </has_archive_member>
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170 <has_archive_member path="analyse_simulations_STICS\/1\/3\/report-3-806_1893-637_NPP1-scenarioName.csv">
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171 <has_n_lines n="133" />
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172 </has_archive_member>
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173 <has_archive_member path="analyse_simulations_STICS\/1\/3\/report-3-806_1893-638_NPP1-scenarioName.csv">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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174 <has_n_lines n="133" />
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175 </has_archive_member>
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176 </assert_contents>
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177 </output>
0
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178 </test>
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179 <test>
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180 <param name="compress" value="false" ftype="boolean" />
9
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181 <param name="outputsOnly" value="false" ftype="boolean" />
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182 <param name="optim" value="false" ftype="boolean" />
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183 <param name="Workspace" value="input/rot1_3.zip" ftype="zip" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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184 <param name="Climat" value="input/flat_cnrm-cm5-aladin63_rcp2.6.zip" ftype="zip" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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185 <param name="USMs" value="input/USMsSheetExp.csv" ftype="csv" />
0
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186 <param name="Tec" value="input/TecSheet.csv" ftype="csv" />
9
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187 <param name="Ini" value="input/IniSheet.csv" ftype="csv" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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188 <param name="Station" value="input/StationsSheetExp.csv" ftype="csv" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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189 <param name="additional" value="input/conf_rot1_3.zip" ftype="zip" />
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190 <param name="SuccessionPlan" value="input/successionsSheetExp.csv" ftype="csv" />
0
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191 <output name="GeneratedWorkspace" ftype="zip" >
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192 <assert_contents>
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193 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-NA-1973-PP1\/new_travail.usm">
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194 <has_text text="806_1893-637_NPP1-1-3-PP-NA-1973-PP1" />
0
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195 </has_archive_member>
9
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196 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-NA-1974-PP\/new_travail.usm">
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197 <has_text text="806_1893-637_NPP1-1-3-PP-NA-1974-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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198 </has_archive_member>
9
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199 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-NA-1975-PP\/new_travail.usm">
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200 <has_text text="806_1893-637_NPP1-1-3-PP-NA-1975-PP" />
0
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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201 </has_archive_member>
9
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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202 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-1976-PPorg\/new_travail.usm">
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203 <has_text text="806_1893-637_NPP1-1-3-PP-ref-1976-PPorg" />
0
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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204 </has_archive_member>
9
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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205 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-1977-PP\/new_travail.usm">
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206 <has_text text="806_1893-637_NPP1-1-3-PP-ref-1977-PP" />
0
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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207 </has_archive_member>
9
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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208 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2000-PPorg\/new_travail.usm">
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209 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2000-PPorg" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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210 </has_archive_member>
9
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211 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2001-PP\/new_travail.usm">
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212 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2001-PP" />
0
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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213 </has_archive_member>
9
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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214 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2002-PP\/new_travail.usm">
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215 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2002-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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216 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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217 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2003-PPorg\/new_travail.usm">
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218 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2003-PPorg" />
0
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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219 </has_archive_member>
9
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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220 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2004-PP\/new_travail.usm">
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221 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2004-PP" />
0
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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222 </has_archive_member>
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223 </assert_contents>
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224 </output>
9
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225 <output name="SimulationResults" ftype="zip" >
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226 <assert_contents>
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227 <has_archive_member path="analyse_simulations_STICS\/1\/3\/outputs-3-806_1893-637_NPP1-scenarioName.rds">
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228 <has_size value="0" negate="true" />
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229 </has_archive_member>
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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230 <has_archive_member path="analyse_simulations_STICS\/1\/3\/outputs-3-806_1893-638_NPP1-scenarioName.rds">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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231 <has_size value="0" negate="true" />
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232 </has_archive_member>
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233 <has_archive_member path="analyse_simulations_STICS\/1\/3\/report-3-806_1893-637_NPP1-scenarioName.csv">
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234 <has_n_lines n="133" />
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235 </has_archive_member>
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236 <has_archive_member path="analyse_simulations_STICS\/1\/3\/report-3-806_1893-638_NPP1-scenarioName.csv">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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237 <has_n_lines n="133" />
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238 </has_archive_member>
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239 </assert_contents>
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240 </output>
0
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241 </test>
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242 </tests>
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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243 <help>
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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244 *The usage of this tool is restricted to the user of the redelac_authorized group.*
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245
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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246 *To be granted, apply to the REDELAC Project Team and then request to SIWAA*
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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247
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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248 Documentation
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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249 -------------
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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250 A tool to generate Stics Inputs according to a plan for REDELAC
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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251
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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252 Credits
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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253 -------
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254 - Wrapped Tool Author: https://www6.paca.inrae.fr/stics_eng/About-us/Project-Stics-Team
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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255 - Stics Site: https://www6.paca.inra.fr/stics_eng
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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256 - Galaxy Tool Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
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257 - Copyright: INRAE
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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258 </help>
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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259 </tool>