Mercurial > repos > siwaa > redelac_stics_t

comparison redelacSticsTool.xml @ 26:e4fa8e333e81 draft default tip

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"planemo upload for repository https://forgemia.inra.fr/redelac commit 70fc17cca6cb1d8ce34e56f3a506ffac0fdcb937"
author siwaa
date Tue, 01 Sep 2026 09:11:57 +0000
parents 6839c9c8555e
children
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25:6839c9c8555e 26:e4fa8e333e81
1 <tool id="redelacSticsTool" name="redelacSticsTool" version="1.0.27"> 1 <tool id="redelacSticsTool" name="redelacSticsTool" version="1.0.28">
2 <description>to run Stics for REDELAC</description> 2 <description>to run Stics for REDELAC</description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forge.inrae.fr/redelac/redelac-toolbox/sticsrpacks:5337507635242b3ad0f3559a1a6b666512ecf002 4 <container type="singularity">docker://registry.forge.inrae.fr/redelac/redelac-toolbox/sticsrpacks:5337507635242b3ad0f3559a1a6b666512ecf002
5 </container> 5 </container>
6 </requirements> 6 </requirements>
7 <command detect_errors="aggressive"> 7 <command detect_errors="aggressive">
8 <![CDATA[ 8 <![CDATA[
9 env && 9 env &&
10 curl "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip" && 10 curl "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip" &&
11 unzip awscliv2.zip && 11 unzip awscliv2.zip &&
12 ./aws/install --update -i ~/.local/aws-cli -b ~/.local/bin && 12 ./aws/install --update -i \${PWD}/.local/aws-cli -b \${PWD}/.local/bin &&
13 export PATH=\${HOME}/.local/bin:\${PATH} && 13 export PATH=\${PWD}/.local/bin:\${PATH} &&
14 aws --version && 14 aws --version &&
15 #if $additional: 15 #if $additional:
16 additional=${additional} && 16 additional=${additional} &&
17 #else 17 #else
18 additional=noAdditionalPlantOrConfig && 18 additional=noAdditionalPlantOrConfig &&