Mercurial > repos > siwaa > redelac_stics_t

changeset 8:cbd23f8906db draft default tip

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"planemo upload for repository https://forgemia.inra.fr/redelac commit 53d19ea66881dcd272711c98940626fa6bb58075"
author siwaa
date Thu, 24 Oct 2024 17:45:22 +0000
parents 200c20fddc80
children
files redelacSticsTool.bash redelacSticsTool.xml
diffstat 2 files changed, 5 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/redelacSticsTool.bash	Thu Oct 10 12:16:43 2024 +0000
+++ b/redelacSticsTool.bash	Thu Oct 24 17:45:22 2024 +0000
@@ -23,7 +23,10 @@
 cd JavaSTICS-1.5.1-STICS-10.0.0 &&
 (if [ "${11}" != "noAdditionalPlantOrConfig" ];
  then
-   unzip -q -o ${11}
+     unzip -q -o ${11} &&
+	 cp -r plant WS &&
+	 cp config/param_gen.xml WS &&
+	 cp config/param_newform.xml WS
 fi) &&
 /usr/bin/time -p -o ./bashlog Rscript --verbose $4/redelacSticsTool.R $1 $2 $3 ${15} &&
 echo "Step 1, time to run the R script:" &&
--- a/redelacSticsTool.xml	Thu Oct 10 12:16:43 2024 +0000
+++ b/redelacSticsTool.xml	Thu Oct 24 17:45:22 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="redelacSticsTool" name="redelacSticsTool" version="1.0.8">
+<tool id="redelacSticsTool" name="redelacSticsTool" version="1.0.9">
   <description>to run Stics for REDELAC</description>
   <requirements>
     <container type="singularity">docker://registry.forgemia.inra.fr/redelac/redelac-toolbox/sticsrpacks:968d2d44e4c167974753344d6c8efa53e1788527</container>