Mercurial > repos > siwaa > redelac_stics_t

diff redelacSticsTool.bash @ 8:cbd23f8906db draft default tip

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"planemo upload for repository https://forgemia.inra.fr/redelac commit 53d19ea66881dcd272711c98940626fa6bb58075"
author siwaa
date Thu, 24 Oct 2024 17:45:22 +0000
parents e0d592bb516e
children
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--- a/redelacSticsTool.bash	Thu Oct 10 12:16:43 2024 +0000
+++ b/redelacSticsTool.bash	Thu Oct 24 17:45:22 2024 +0000
@@ -23,7 +23,10 @@
 cd JavaSTICS-1.5.1-STICS-10.0.0 &&
 (if [ "${11}" != "noAdditionalPlantOrConfig" ];
  then
-   unzip -q -o ${11}
+     unzip -q -o ${11} &&
+	 cp -r plant WS &&
+	 cp config/param_gen.xml WS &&
+	 cp config/param_newform.xml WS
 fi) &&
 /usr/bin/time -p -o ./bashlog Rscript --verbose $4/redelacSticsTool.R $1 $2 $3 ${15} &&
 echo "Step 1, time to run the R script:" &&