diff SMSticsTool-9.2.xml @ 0:ab62b4ecd5b9 draft default tip

"planemo upload for repository https://forgemia.inra.fr/quaysofthestics/sticsquays/-/tree/master/tools commit 5e434da355bade7d12364ccbd84b53848e6fa4c5"
author siwaa
date Mon, 18 Jul 2022 10:54:39 +0000
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+++ b/SMSticsTool-9.2.xml	Mon Jul 18 10:54:39 2022 +0000
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+<tool id="SMSticsTool-9.2" name="sms_stics-9.2" version="1.0.0">
+  <description>to run the Stics simulator on the SMS DB [Stics-9.2]</description>
+  <requirements>
+    <container type="singularity">docker://registry.forgemia.inra.fr/quaysofthestics/sticsquays/rstudio_stics_sms:9.2</container>
+  </requirements>
+  <command detect_errors="aggressive">
+    <![CDATA[ 
+	     cp -r /home/rstudio/JavaSTICS-1.41-stics-9.2/ . &&
+	     cp -R /home/rstudio/EvaluationReports . &&
+	     unzip ${SMSdb} &&
+	     cp ${plan} USMlist.csv &&
+	     Rscript --verbose $__tool_directory__/eval_only_stics_on_sms.R &&
+	     zip -r eval.zip work/eval_* &&
+	     cp eval.zip ${evalFolder}
+     ]]>
+  </command>
+  <inputs>
+    <param name="SMSdb" type="data" format="zip" label="Select a stics SMS DB (zip file)"/>
+    <param name="plan" type="data" format="csv" label="Select a plan (csv file)"/>
+  </inputs>
+  <outputs>
+    <data format="zip" name="evalFolder"
+          label="Stics SMS Evaluation Folder">
+    </data>
+  </outputs>
+  <tests>
+  </tests>
+  <help>
+*The usage of this tool is restricted to the user of the stics_authorized group.*
+
+*To be granted, apply to the Project Stics Team and then request to SIWAA*
+
+Documentation
+-------------
+A tool to run the Stics simulator on a Stics SMS database.
+
+Credits
+-------
+-  Wrapped Tool Author: https://www6.paca.inrae.fr/stics_eng/About-us/Project-Stics-Team
+-  Stics Site: https://www6.paca.inra.fr/stics_eng
+-  Galaxy Tool Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
+-  Copyright: INRAE
+  </help>
+</tool>