<tool id="SMSticsTool-9.2" name="sms_stics-9.2" version="1.0.0">
  <description>to run the Stics simulator on the SMS DB [Stics-9.2]</description>
  <requirements>
    <container type="singularity">docker://registry.forgemia.inra.fr/quaysofthestics/sticsquays/rstudio_stics_sms:9.2</container>
  </requirements>
  <command detect_errors="aggressive">
    <![CDATA[ 
	     cp -r /home/rstudio/JavaSTICS-1.41-stics-9.2/ . &&
	     cp -R /home/rstudio/EvaluationReports . &&
	     unzip ${SMSdb} &&
	     cp ${plan} USMlist.csv &&
	     Rscript --verbose $__tool_directory__/eval_only_stics_on_sms.R &&
	     zip -r eval.zip work/eval_* &&
	     cp eval.zip ${evalFolder}
     ]]>
  </command>
  <inputs>
    <param name="SMSdb" type="data" format="zip" label="Select a stics SMS DB (zip file)"/>
    <param name="plan" type="data" format="csv" label="Select a plan (csv file)"/>
  </inputs>
  <outputs>
    <data format="zip" name="evalFolder"
          label="Stics SMS Evaluation Folder">
    </data>
  </outputs>
  <tests>
  </tests>
  <help>
*The usage of this tool is restricted to the user of the stics_authorized group.*

*To be granted, apply to the Project Stics Team and then request to SIWAA*

Documentation
-------------
A tool to run the Stics simulator on a Stics SMS database.

Credits
-------
-  Wrapped Tool Author: https://www6.paca.inrae.fr/stics_eng/About-us/Project-Stics-Team
-  Stics Site: https://www6.paca.inra.fr/stics_eng
-  Galaxy Tool Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
-  Copyright: INRAE
  </help>
</tool>