Mercurial > repos > siwaa > sms
diff SMSticsTool-9.2.xml @ 0:ab62b4ecd5b9 draft default tip
"planemo upload for repository https://forgemia.inra.fr/quaysofthestics/sticsquays/-/tree/master/tools commit 5e434da355bade7d12364ccbd84b53848e6fa4c5"
author | siwaa |
---|---|
date | Mon, 18 Jul 2022 10:54:39 +0000 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/SMSticsTool-9.2.xml Mon Jul 18 10:54:39 2022 +0000 @@ -0,0 +1,44 @@ +<tool id="SMSticsTool-9.2" name="sms_stics-9.2" version="1.0.0"> + <description>to run the Stics simulator on the SMS DB [Stics-9.2]</description> + <requirements> + <container type="singularity">docker://registry.forgemia.inra.fr/quaysofthestics/sticsquays/rstudio_stics_sms:9.2</container> + </requirements> + <command detect_errors="aggressive"> + <![CDATA[ + cp -r /home/rstudio/JavaSTICS-1.41-stics-9.2/ . && + cp -R /home/rstudio/EvaluationReports . && + unzip ${SMSdb} && + cp ${plan} USMlist.csv && + Rscript --verbose $__tool_directory__/eval_only_stics_on_sms.R && + zip -r eval.zip work/eval_* && + cp eval.zip ${evalFolder} + ]]> + </command> + <inputs> + <param name="SMSdb" type="data" format="zip" label="Select a stics SMS DB (zip file)"/> + <param name="plan" type="data" format="csv" label="Select a plan (csv file)"/> + </inputs> + <outputs> + <data format="zip" name="evalFolder" + label="Stics SMS Evaluation Folder"> + </data> + </outputs> + <tests> + </tests> + <help> +*The usage of this tool is restricted to the user of the stics_authorized group.* + +*To be granted, apply to the Project Stics Team and then request to SIWAA* + +Documentation +------------- +A tool to run the Stics simulator on a Stics SMS database. + +Credits +------- +- Wrapped Tool Author: https://www6.paca.inrae.fr/stics_eng/About-us/Project-Stics-Team +- Stics Site: https://www6.paca.inra.fr/stics_eng +- Galaxy Tool Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr +- Copyright: INRAE + </help> +</tool>