annotate stics4carsolel.xml @ 0:f1070dc2446c draft

"planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
author siwaa
date Mon, 25 Oct 2021 11:32:31 +0000
parents
children 5e581bfc5341
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
1 <tool id="Stics4CarSolEl" name="Stics4CarSolEl" version="1.0.0">
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
2 <description>Vle Stics simulations in rotation parallelized by cvle for the CarSolEl project</description>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
3 <requirements>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
4 <container type="singularity">docker://registry.forgemia.inra.fr/record/carsolel</container>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
5 </requirements>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
6 <command detect_errors="exit_code">
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
7 bash $__tool_directory__/stics4carsolel.bash \${GALAXY_SLOTS:-2} ${cvle_plan} ${output_file};
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
8 </command>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
9 <inputs>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
10 <param name="cvle_plan" type="data" format="csv" label="Select a cvle plan in (csv file)"/>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
11 </inputs>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
12 <outputs>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
13 <data format='csv' name="output_file" label="Stics simulations results"/>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
14 </outputs>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
15 <tests>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
16 <test>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
17 <param name="cvle_plan" value="inputs/dummy50.csv" ftype="csv" />
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
18 <output name="output_file" ftype="csv">
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
19 <assert_contents>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
20 <has_n_lines n="151" />
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
21 </assert_contents>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
22 </output>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
23 </test>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
24 </tests>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
25 <help>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
26 the Stics4CarSolEl simulator
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
27 ============================
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
28
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
29 credits
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
30 -------
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
31
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
32 - Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
33 - Tool Maintainer: Eric Casellas eric.casellas@inrae.fr
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
34 - Tool Site: https://forgemia.inra.fr/record/carsolel
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
35 - Copyright: INRAE
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
36 </help>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
37 </tool>