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comparison stics4carsolel.xml @ 4:6a77442a3598 draft

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"planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 7298c614ca40b1e5bffb2a0bc6a6ea8b16b7fc37"
author siwaa
date Mon, 07 Feb 2022 13:29:50 +0000
parents 5e581bfc5341
children
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3:e7965152f2b0 4:6a77442a3598
2 <description>Vle Stics simulations in rotation parallelized by cvle for the CarSolEl project</description> 2 <description>Vle Stics simulations in rotation parallelized by cvle for the CarSolEl project</description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/record/carsolel</container> 4 <container type="singularity">docker://registry.forgemia.inra.fr/record/carsolel</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"> 6 <command detect_errors="exit_code">
7 bash $__tool_directory__/stics4carsolel.bash \${GALAXY_SLOTS:-2} ${cvle_plan} ${output_file} ${meteo_archive}; 7 bash $__tool_directory__/stics4carsolel.bash \${GALAXY_SLOTS:-2} ${cvle_plan} ${output_file} ${meteo_archive} ${station_archive} ${soil_archive};
8 </command> 8 </command>
9 <inputs> 9 <inputs>
10 <param name="cvle_plan" type="data" format="csv" label="Select a cvle plan in (csv file)"/> 10 <param name="cvle_plan" type="data" format="csv" label="Select a cvle plan in (csv file)"/>
11 <param name="meteo_archive" type="data" format="zip" label="Select a meteo archive (zip file)"/> 11 <param name="meteo_archive" type="data" format="zip" label="Select a meteo archive (zip file)"/>
12 <param name="station_archive" type="data" format="zip" label="Select a station archive (zip file)"/>
13 <param name="soil_archive" type="data" format="zip" label="Select a soil archive (zip file)"/>
12 </inputs> 14 </inputs>
13 <outputs> 15 <outputs>
14 <data format='csv' name="output_file" label="Stics simulations results"/> 16 <data format='csv' name="output_file" label="Stics simulations results"/>
15 </outputs> 17 </outputs>
16 <tests> 18 <tests>
17 <test> 19 <test>
18 <param name="cvle_plan" value="inputs/dummy50.csv" ftype="csv" /> 20 <param name="cvle_plan" value="inputs/dummy50.csv" ftype="csv" />
19 <param name="meteo_archive" value="inputs/meteo.zip" ftype="zip" /> 21 <param name="meteo_archive" value="inputs/meteo.zip" ftype="zip" />
22 <param name="station_archive" value="inputs/station.zip" ftype="zip" />
23 <param name="soil_archive" value="inputs/sol.zip" ftype="zip" />
20 <output name="output_file" ftype="csv"> 24 <output name="output_file" ftype="csv">
21 <assert_contents> 25 <assert_contents>
22 <has_n_lines n="151" /> 26 <has_n_lines n="151" />
23 </assert_contents> 27 </assert_contents>
24 </output> 28 </output>