Mercurial > repos > siwaa > stics4carsolel

comparison stics4carsolel.bash @ 0:f1070dc2446c draft

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"planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
author siwaa
date Mon, 25 Oct 2021 11:32:31 +0000
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children bf2d7f74d5ba
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-1:000000000000 0:f1070dc2446c
1 echo "Stics4CarSolEl Job starting:"
2 date;
3
4 n_slots=${1};
5 csv_plan=${2};
6 sim_number=$(($(cat ${csv_plan} | wc -l) - 1));
7
8 b_size=1
9
10 echo "number of GALAXY_SLOTS: ${1}"
11
12 echo "expected simulations: ${sim_number}"
13 echo "cvle block size : ${b_size}"
14
15 cvle -b $b_size -i ${2} -w work -P Stics4AgFlow -P CarSolEl_sim CarSolEl.vpz
16
17 ls work_*/*_byUsm.txt | xargs -t -i tail -n +2 {} | sort -n -k 1 -t ';' > resWithoutHeader.csv
18
19 head -1 work_0/1_byUsm.txt > header.cvs
20
21 cat header.cvs resWithoutHeader.csv > res.csv
22
23 mv res.csv ${3}
24
25 echo "Stics4AgGlob Job ending:"
26 date;