view stics4carsolel.bash @ 1:bf2d7f74d5ba draft

"planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 8e31109ca8b9104e8f66b9bf56c08cd0bfc1136f"
author siwaa
date Mon, 22 Nov 2021 15:15:08 +0000
parents f1070dc2446c
children 5e581bfc5341
line wrap: on
line source

echo "Stics4CarSolEl Job starting:"
date;

n_slots=${1};
csv_plan=${2};
sim_number=$(($(cat ${csv_plan} | wc -l) - 1));

b_size=1

echo "number of GALAXY_SLOTS: ${1}"

echo "expected simulations: ${sim_number}"
echo "cvle block size : ${b_size}"

cvle -b $b_size -i ${2} -w work -P Stics4AgFlow -P CarSolEl_sim CarSolEl.vpz

if [ "$OMPI_COMM_WORLD_RANK" == "0" ]; then

    ls work_*/*_byUsm.txt | \
	xargs -t -i tail -n +2 {} | \
	sort -n -k 1 -t ';' > resWithoutHeader.csv

    head -1 work_0/1_byUsm.txt > header.cvs

    cat header.cvs resWithoutHeader.csv > res.csv

    mv res.csv ${3}

fi

echo "Stics4AgGlob Job ending:"
date;