Mercurial > repos > siwaa > stics4carsolel
diff stics4carsolel.bash @ 0:f1070dc2446c draft
"planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
author | siwaa |
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date | Mon, 25 Oct 2021 11:32:31 +0000 |
parents | |
children | bf2d7f74d5ba |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/stics4carsolel.bash Mon Oct 25 11:32:31 2021 +0000 @@ -0,0 +1,26 @@ +echo "Stics4CarSolEl Job starting:" +date; + +n_slots=${1}; +csv_plan=${2}; +sim_number=$(($(cat ${csv_plan} | wc -l) - 1)); + +b_size=1 + +echo "number of GALAXY_SLOTS: ${1}" + +echo "expected simulations: ${sim_number}" +echo "cvle block size : ${b_size}" + +cvle -b $b_size -i ${2} -w work -P Stics4AgFlow -P CarSolEl_sim CarSolEl.vpz + +ls work_*/*_byUsm.txt | xargs -t -i tail -n +2 {} | sort -n -k 1 -t ';' > resWithoutHeader.csv + +head -1 work_0/1_byUsm.txt > header.cvs + +cat header.cvs resWithoutHeader.csv > res.csv + +mv res.csv ${3} + +echo "Stics4AgGlob Job ending:" +date;