diff stics4carsolel.bash @ 0:f1070dc2446c draft

"planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
author siwaa
date Mon, 25 Oct 2021 11:32:31 +0000
parents
children bf2d7f74d5ba
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/stics4carsolel.bash	Mon Oct 25 11:32:31 2021 +0000
@@ -0,0 +1,26 @@
+echo "Stics4CarSolEl Job starting:"
+date;
+
+n_slots=${1};
+csv_plan=${2};
+sim_number=$(($(cat ${csv_plan} | wc -l) - 1));
+
+b_size=1
+
+echo "number of GALAXY_SLOTS: ${1}"
+
+echo "expected simulations: ${sim_number}"
+echo "cvle block size : ${b_size}"
+
+cvle -b $b_size -i ${2} -w work -P Stics4AgFlow -P CarSolEl_sim CarSolEl.vpz
+
+ls work_*/*_byUsm.txt | xargs -t -i tail -n +2 {} | sort -n -k 1 -t ';' > resWithoutHeader.csv
+
+head -1 work_0/1_byUsm.txt > header.cvs
+
+cat header.cvs resWithoutHeader.csv > res.csv
+
+mv res.csv ${3}
+
+echo "Stics4AgGlob Job ending:"
+date;