view stics4carsolel.bash @ 0:f1070dc2446c draft

"planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
author siwaa
date Mon, 25 Oct 2021 11:32:31 +0000
parents
children bf2d7f74d5ba
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echo "Stics4CarSolEl Job starting:"
date;

n_slots=${1};
csv_plan=${2};
sim_number=$(($(cat ${csv_plan} | wc -l) - 1));

b_size=1

echo "number of GALAXY_SLOTS: ${1}"

echo "expected simulations: ${sim_number}"
echo "cvle block size : ${b_size}"

cvle -b $b_size -i ${2} -w work -P Stics4AgFlow -P CarSolEl_sim CarSolEl.vpz

ls work_*/*_byUsm.txt | xargs -t -i tail -n +2 {} | sort -n -k 1 -t ';' > resWithoutHeader.csv

head -1 work_0/1_byUsm.txt > header.cvs

cat header.cvs resWithoutHeader.csv > res.csv

mv res.csv ${3}

echo "Stics4AgGlob Job ending:"
date;