Mercurial > repos > siwaa > sunflo

annotate tool_SUNFLO.xml.bak @ 0:53d753cb6b81 draft

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"planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/master/misc/galaxy_tools commit 67ecf5a057de84342a865b7346fe9d096e795298-dirty"
author siwaa
date Wed, 15 Dec 2021 13:10:41 +0000
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53d753cb6b81 "planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/master/misc/galaxy_tools commit 67ecf5a057de84342a865b7346fe9d096e795298-dirty"
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1 <tool id="SUNFLO" name="SUNFLO crop model simulations" version="1.0.0">
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2 <description></description>
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3 <requirements>
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4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:latest</container>
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5 </requirements>
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6 <command detect_errors="aggressive">
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7 unzip ${input_meteo};
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8 /bin/bash -c "Rscript --verbose /data/RECORD/misc/docker/rAzodynSunflo.R sunflo_web.vpz sunflo ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}";
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9 zip temp_results.zip simresults_*.txt;
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10 cp temp_results.zip ${simresults};
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11 </command>
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12 <inputs>
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13 <param name="input_meteo" type="data" format="zip" label="Wheater serie input files (zip file)"/>
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14 <param name="file_input" type="data" format="csv" label="Crop model input values"/>
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15 <param name="file_outputs" type="data" format="csv" label="Outputs to simulate"/>
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16 </inputs>
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17 <outputs>
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18 <data format="zip" name="simresults" />
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19 </outputs>
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20 <help><![CDATA[
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21 SUNFLO crop model simulations
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22 =============================
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24 Inputs:
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25 -------
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27 - Zip file of wheather series
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28 - Input values of the crop model (1 simulation per row)
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29 - Identification of the crop model output to simulate.
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31 Outputs:
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32 --------
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34 - Zip file of the crop model simulation values (1 file per output)
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36 Example:
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37 --------
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53d753cb6b81 "planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/master/misc/galaxy_tools commit 67ecf5a057de84342a865b7346fe9d096e795298-dirty"
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39 - Copy to your history files 'sunflo_meteo.zip', 'sunflo_input.csv' and 'sunflo_output.csv' from the SUNFLO shared dataset.
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40 - Fill file names and choose the adequate number of cores.
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41 - And then execute
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53d753cb6b81 "planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/master/misc/galaxy_tools commit 67ecf5a057de84342a865b7346fe9d096e795298-dirty"
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43 Credits:
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44 --------
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46 - Author: Ronan Trépos ronan.trepos@inrae.fr
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47 - Wrapper Maintainer: Ronan Trépos ronan.trepos@inrae.fr
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48 - Tool Maintainer: Ronan Trépos ronan.trepos@inrae.fr
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49 - Copyright: INRAE]]>
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50 </help>
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51 </tool>
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52