Mercurial > repos > siwaa > wine_quality
diff wine_quality.xml @ 2:c1b75945752a draft
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality commit c595a7b4b556ab642ecf0396957f2959139dc4ab-dirty
author | siwaa |
---|---|
date | Mon, 09 Dec 2024 10:31:09 +0000 |
parents | c3841488b88d |
children | f542f29a920c |
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--- a/wine_quality.xml Wed Dec 04 18:35:18 2024 +0000 +++ b/wine_quality.xml Mon Dec 09 10:31:09 2024 +0000 @@ -5,23 +5,20 @@ <requirements> <!-- singularity --> - <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:6d159f79349e231deadb738f79bd293c1a8dadd3</container> + <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:c595a7b4b556ab642ecf0396957f2959139dc4ab</container> <!-- image locale <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container --> </requirements> - <environment_variables> - <environment_variable name="FIDLE_DATASETS_DIR">/fidle-tp/datasets-fidle</environment_variable> - </environment_variables> <command detect_errors="aggressive"> <![CDATA[ - . /fidle-tp/fidle-env/bin/activate; - mkdir /fidle-tp/fidle-env/cache_dir; export TRANSFORMERS_CACHE=/fidle-tp/fidle-env/cache_dir; - mkdir /fidle-tp/fidle-env/mpl_dir; export MPLCONFIGDIR=/fidle-tp/fidle-env/mpl_dir; - /bin/bash -c "python3 $__tool_directory__/wine_quality.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data '${datajson_text}'"; - cp OUTPUTS/quality.txt ${quality_txt}; + bash -e -c "source /fidle-tp/fidle-env/bin/activate && + mkdir datasets-fidle && + export FIDLE_DATASETS_DIR=\$(realpath -s datasets-fidle) && + python3 $__tool_directory__/wine_quality.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data '${datajson_text}' && + cp OUTPUTS/quality.txt ${quality_txt}" ]]> </command>