<tool id="wine_quality" name="wine_quality" version="1.0.0">

  <description>wine_quality</description>

  <requirements>

    <!-- singularity -->
    <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:c595a7b4b556ab642ecf0396957f2959139dc4ab</container>

    <!-- image locale
    <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container -->

  </requirements>

  <command detect_errors="aggressive">
    <![CDATA[
    bash -e -c "source /fidle-tp/fidle-env/bin/activate &&
    mkdir datasets-fidle &&
    export FIDLE_DATASETS_DIR=\$(realpath -s datasets-fidle) &&
    mkdir cache_dir &&
    export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) &&
    mkdir mpl_dir &&
    export MPLCONFIGDIR=\$(realpath -s mpl_dir) &&
    python3 $__tool_directory__/wine_quality.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data '${datajson_text}' &&
    cp OUTPUTS/quality.txt ${quality_txt}"
    ]]>
  </command>

  <inputs>
    <param name="datajson_text" optional="false" type="text" area="true"
           label="Data of wine whose quality to be predicted (json as text)"/>
    <param name="model_ckpt" optional="false" type="data" format="ckpt" 
           label="model_ckpt model file (.ckpt)"/>
    <param name="norm_config_json" optional="false" type="data" format="json" 
           label="norm_config normalization configuration (.json)"/>
  </inputs>

  <outputs>
    <data format="txt" name="quality_txt" label="quality (.txt)"/>
  </outputs>

  <tests>
  </tests>

  <help><![CDATA[

wine_quality.xml

===========================

Code:

----

- wine_quality.py

Inputs:

-------

- data json as text : data of wine for which quality is going to be predicted.

  - example :

    - {"fixed acidity": 11.2, "volatile acidity": 0.28, "citric acid": 0.56, "residual sugar": 1.9, "chlorides": 0.075, "free sulfur dioxide": 17, "total sulfur dioxide": 60, "density": 0.998, "pH": 3.16, "sulphates": 0.58, "alcohol": 9.8}

- Model file (.ckpt)

- Normalization configuration file (.json)

Outputs:

--------

- Quality file (.txt)

Credits:

--------

-  Author: Nathalie Rousse nathalie.rousse@inrae.fr
-  Copyright: INRAE

  ]]>
  </help>

</tool>