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comparison wine_quality_predict.xml.original @ 2:4d31508e95c6 draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_predict commit 58f66f614dc32b7550ac23e52d84248ddc802863-dirty
author siwaa
date Fri, 06 Dec 2024 19:17:19 +0000
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1:f9637dc4e18a 2:4d31508e95c6
1 <tool id="wine_quality_predict" name="wine_quality_predict" version="1.0.0">
2
3 <description>wine_quality_predict</description>
4
5 <requirements>
6
7 <!-- singularity -->
8 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:6d159f79349e231deadb738f79bd293c1a8dadd3</container>
9
10 <!-- image locale
11 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container -->
12
13 </requirements>
14
15 <environment_variables>
16 <environment_variable name="FIDLE_DATASETS_DIR">/fidle-tp/datasets-fidle</environment_variable>
17 </environment_variables>
18 <command detect_errors="aggressive">
19 <![CDATA[
20 . /fidle-tp/fidle-env/bin/activate;
21 mkdir /fidle-tp/fidle-env/cache_dir; export TRANSFORMERS_CACHE=/fidle-tp/fidle-env/cache_dir;
22 mkdir /fidle-tp/fidle-env/mpl_dir; export MPLCONFIGDIR=/fidle-tp/fidle-env/mpl_dir;
23 /bin/bash -c "python3 /fidlemore/model_wine_lightning/wine_quality_predict.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data_json_filepath ${data_json}";
24 cp OUTPUTS/report.json ${report_json};
25 ]]>
26 </command>
27
28 <inputs>
29 <param name="data_json" optional="false" type="data" format="json"
30 label="File of data of wine whose quality to be predicted (.json)"/>
31 <param name="model_ckpt" optional="false" type="data" format="ckpt"
32 label="model_ckpt model file (.ckpt)"/>
33 <param name="norm_config_json" optional="false" type="data" format="json"
34 label="norm_config normalization configuration (.json)"/>
35 </inputs>
36
37 <outputs>
38 <data format="json" name="report_json" label="report (.json)"/>
39 </outputs>
40
41 <tests>
42 </tests>
43
44 <help><![CDATA[
45
46 wine_quality_predict.xml
47
48 ===========================
49
50 Code:
51
52 ----
53
54 - wine_quality_predict.py
55
56 Inputs:
57
58 -------
59
60 - data file (.json) :
61 File containing data of wine for which quality is going to be predicted.
62
63 - Model file (.ckpt)
64
65 - Normalization configuration file (.json)
66
67 Outputs:
68
69 --------
70
71 - Report file (.json)
72
73 Credits:
74
75 --------
76
77 - Author: Nathalie Rousse nathalie.rousse@inrae.fr
78 - Copyright: INRAE
79
80 ]]>
81 </help>
82
83 </tool>