Mercurial > repos > siwaa > wine_quality_predict
diff wine_quality_predict.xml @ 4:e88a46bee6e5 draft
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_predict commit c595a7b4b556ab642ecf0396957f2959139dc4ab-dirty
author | siwaa |
---|---|
date | Mon, 09 Dec 2024 10:53:55 +0000 |
parents | 01bf4f689614 |
children | 5024511f841e |
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--- a/wine_quality_predict.xml Fri Dec 06 19:19:30 2024 +0000 +++ b/wine_quality_predict.xml Mon Dec 09 10:53:55 2024 +0000 @@ -5,28 +5,18 @@ <requirements> <!-- singularity --> - <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:1906137478520a9f71a4d8996c0a8827f27aed16</container> + <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:c595a7b4b556ab642ecf0396957f2959139dc4ab</container> <!-- image locale <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container --> </requirements> - <environment_variables> - </environment_variables> <command detect_errors="aggressive"> <![CDATA[ - bash -e -c "source /fidle-tp/fidle-env/bin/activate && mkdir datasets-fidle && export FIDLE_DATASETS_DIR=\$(realpath -s datasets-fidle) && - mkdir ipython_dir && - export IPYTHONDIR=\$(realpath -s ipython_dir) && - ipython profile create default && - mkdir cache_dir && - export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) && - mkdir mpl_dir && - export MPLCONFIGDIR=\$(realpath -s mpl_dir) && python3 /fidlemore/model_wine_lightning/wine_quality_predict.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data_json_filepath ${data_json} && cp OUTPUTS/report.json ${report_json}" ]]>