diff wine_quality_predict.xml @ 4:e88a46bee6e5 draft

planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_predict commit c595a7b4b556ab642ecf0396957f2959139dc4ab-dirty
author siwaa
date Mon, 09 Dec 2024 10:53:55 +0000
parents 01bf4f689614
children 5024511f841e
line wrap: on
line diff
--- a/wine_quality_predict.xml	Fri Dec 06 19:19:30 2024 +0000
+++ b/wine_quality_predict.xml	Mon Dec 09 10:53:55 2024 +0000
@@ -5,28 +5,18 @@
   <requirements>
 
     <!-- singularity -->
-    <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:1906137478520a9f71a4d8996c0a8827f27aed16</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:c595a7b4b556ab642ecf0396957f2959139dc4ab</container>
 
     <!-- image locale
     <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container -->
 
   </requirements>
 
-  <environment_variables>
-  </environment_variables>
   <command detect_errors="aggressive">
     <![CDATA[
-
     bash -e -c "source /fidle-tp/fidle-env/bin/activate &&
     mkdir datasets-fidle &&
     export FIDLE_DATASETS_DIR=\$(realpath -s datasets-fidle) &&
-    mkdir ipython_dir &&
-    export IPYTHONDIR=\$(realpath -s ipython_dir) &&
-    ipython profile create default &&
-    mkdir cache_dir &&
-    export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) &&
-    mkdir mpl_dir &&
-    export MPLCONFIGDIR=\$(realpath -s mpl_dir) &&
     python3 /fidlemore/model_wine_lightning/wine_quality_predict.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data_json_filepath ${data_json} &&
     cp OUTPUTS/report.json ${report_json}"
     ]]>