Mercurial > repos > siwaa > wine_quality_predict

annotate wine_quality_predict.xml @ 4:e88a46bee6e5 draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_predict commit c595a7b4b556ab642ecf0396957f2959139dc4ab-dirty
author siwaa
date Mon, 09 Dec 2024 10:53:55 +0000
parents 01bf4f689614
children 5024511f841e
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605f9329d94e planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_predict commit e7c4e447552083db7eaecbdf139a7c359fe9becc
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1 <tool id="wine_quality_predict" name="wine_quality_predict" version="1.0.0">
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3 <description>wine_quality_predict</description>
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5 <requirements>
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7 <!-- singularity -->
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8 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:c595a7b4b556ab642ecf0396957f2959139dc4ab</container>
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10 <!-- image locale
605f9329d94e planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_predict commit e7c4e447552083db7eaecbdf139a7c359fe9becc
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11 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container -->
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13 </requirements>
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15 <command detect_errors="aggressive">
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16 <![CDATA[
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17 bash -e -c "source /fidle-tp/fidle-env/bin/activate &&
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18 mkdir datasets-fidle &&
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19 export FIDLE_DATASETS_DIR=\$(realpath -s datasets-fidle) &&
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20 python3 /fidlemore/model_wine_lightning/wine_quality_predict.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data_json_filepath ${data_json} &&
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21 cp OUTPUTS/report.json ${report_json}"
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22 ]]>
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23 </command>
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25 <inputs>
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26 <param name="data_json" optional="false" type="data" format="json"
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27 label="File of data of wine whose quality to be predicted (.json)"/>
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28 <param name="model_ckpt" optional="false" type="data" format="ckpt"
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29 label="model_ckpt model file (.ckpt)"/>
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30 <param name="norm_config_json" optional="false" type="data" format="json"
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31 label="norm_config normalization configuration (.json)"/>
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32 </inputs>
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34 <outputs>
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35 <data format="json" name="report_json" label="report (.json)"/>
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36 </outputs>
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38 <tests>
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39 </tests>
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41 <help><![CDATA[
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43 wine_quality_predict.xml
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45 ===========================
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47 Code:
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49 ----
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51 - wine_quality_predict.py
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53 Inputs:
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55 -------
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57 - data file (.json) :
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58 File containing data of wine for which quality is going to be predicted.
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60 - Model file (.ckpt)
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62 - Normalization configuration file (.json)
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64 Outputs:
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66 --------
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68 - Report file (.json)
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70 Credits:
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72 --------
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74 - Author: Nathalie Rousse nathalie.rousse@inrae.fr
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75 - Copyright: INRAE
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77 ]]>
605f9329d94e planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_predict commit e7c4e447552083db7eaecbdf139a7c359fe9becc
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78 </help>
605f9329d94e planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_predict commit e7c4e447552083db7eaecbdf139a7c359fe9becc
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605f9329d94e planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_predict commit e7c4e447552083db7eaecbdf139a7c359fe9becc
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80 </tool>