Mercurial > repos > siwaa > wine_quality_train_eval

comparison wine_quality_train_eval.xml @ 6:51f36952ccaa draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit e7c4e447552083db7eaecbdf139a7c359fe9becc-dirty
author siwaa
date Thu, 05 Dec 2024 11:45:31 +0000
parents d30ad788a0ae
children 92c6d97ef171
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5:d30ad788a0ae 6:51f36952ccaa
16 <environment_variables> 16 <environment_variables>
17 <environment_variable name="FIDLE_DATASETS_DIR">/fidle-tp/datasets-fidle</environment_variable> 17 <environment_variable name="FIDLE_DATASETS_DIR">/fidle-tp/datasets-fidle</environment_variable>
18 </environment_variables> 18 </environment_variables>
19 <command detect_errors="aggressive"> 19 <command detect_errors="aggressive">
20 <![CDATA[ 20 <![CDATA[
21 bash -e -c "cp -fr /fidle-tp/fidle-env fidle-env && 21 bash -e -c "source /fidle-tp/fidle-env/bin/activate &&
22 source fidle-env/bin/activate &&
23 mkdir cache_dir && 22 mkdir cache_dir &&
24 mkdir mpl_dir && 23 mkdir mpl_dir &&
25 export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) && 24 export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) &&
26 export MPLCONFIGDIR=\$(realpath -s mpl_dir) && 25 export MPLCONFIGDIR=\$(realpath -s mpl_dir) &&
27 python3 /fidlemore/model_wine_lightning/wine_quality_train_eval.py -dataset_filepath ${dataset_csv} && 26 cp /fidlemore/model_wine_lightning/wine_quality_train_eval.py wine_quality_train_eval.py &&
27 python3 wine_quality_train_eval.py -dataset_filepath ${dataset_csv} &&
28 cp OUTPUTS/model.ckpt ${model_ckpt} && 28 cp OUTPUTS/model.ckpt ${model_ckpt} &&
29 cp OUTPUTS/norm_config.json ${norm_config_json} && 29 cp OUTPUTS/norm_config.json ${norm_config_json} &&
30 cp OUTPUTS/report.json ${report_json}" 30 cp OUTPUTS/report.json ${report_json}"
31 ]]> 31 ]]>
32 </command> 32 </command>