Mercurial > repos > siwaa > wine_quality_train_eval

diff wine_quality_train_eval.xml @ 6:51f36952ccaa draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit e7c4e447552083db7eaecbdf139a7c359fe9becc-dirty
author siwaa
date Thu, 05 Dec 2024 11:45:31 +0000
parents d30ad788a0ae
children 92c6d97ef171
line wrap: on
line diff
--- a/wine_quality_train_eval.xml	Thu Dec 05 10:31:50 2024 +0000
+++ b/wine_quality_train_eval.xml	Thu Dec 05 11:45:31 2024 +0000
@@ -18,13 +18,13 @@
   </environment_variables>
   <command detect_errors="aggressive">
     <![CDATA[
-    bash -e -c "cp -fr /fidle-tp/fidle-env fidle-env &&
-    source fidle-env/bin/activate &&
+    bash -e -c "source /fidle-tp/fidle-env/bin/activate &&
     mkdir cache_dir &&
     mkdir mpl_dir &&
     export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) &&
     export MPLCONFIGDIR=\$(realpath -s mpl_dir) &&
-    python3 /fidlemore/model_wine_lightning/wine_quality_train_eval.py -dataset_filepath ${dataset_csv} &&
+    cp /fidlemore/model_wine_lightning/wine_quality_train_eval.py wine_quality_train_eval.py &&
+    python3 wine_quality_train_eval.py -dataset_filepath ${dataset_csv} &&
     cp OUTPUTS/model.ckpt ${model_ckpt} &&
     cp OUTPUTS/norm_config.json ${norm_config_json} &&
     cp OUTPUTS/report.json ${report_json}"