Mercurial > repos > siwaa > wine_quality_train_eval

comparison wine_quality_train_eval.xml @ 19:a9b2e3ba898b draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit c595a7b4b556ab642ecf0396957f2959139dc4ab-dirty
author siwaa
date Mon, 09 Dec 2024 11:06:43 +0000
parents 8916f75916b6
children 083671dfbef9
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18:8916f75916b6 19:a9b2e3ba898b
4 <description>wine_quality_train_eval</description> 4 <description>wine_quality_train_eval</description>
5 5
6 <requirements> 6 <requirements>
7 7
8 <!-- singularity --> 8 <!-- singularity -->
9 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:1906137478520a9f71a4d8996c0a8827f27aed16</container> 9 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:c595a7b4b556ab642ecf0396957f2959139dc4ab</container>
10 10
11 <!-- image locale 11 <!-- image locale
12 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container --> 12 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container -->
13 13
14 </requirements> 14 </requirements>
15 15
16 <environment_variables>
17 </environment_variables>
18 <command detect_errors="aggressive"> 16 <command detect_errors="aggressive">
19 <![CDATA[ 17 <![CDATA[
20 bash -e -c "source /fidle-tp/fidle-env/bin/activate && 18 bash -e -c "source /fidle-tp/fidle-env/bin/activate &&
21 mkdir datasets-fidle && 19 mkdir datasets-fidle &&
22 export FIDLE_DATASETS_DIR=\$(realpath -s datasets-fidle) && 20 export FIDLE_DATASETS_DIR=\$(realpath -s datasets-fidle) &&
23 mkdir ipython_dir && 21 mkdir datasets-fidle/WineQuality &&
24 export IPYTHONDIR=\$(realpath -s ipython_dir) && 22 mkdir datasets-fidle/WineQuality/origine &&
25 ipython profile create default && 23 cp /fidle-tp/datasets-fidle/WineQuality/origine/winequality-red.csv datasets-fidle/WineQuality/origine/. &&
26 mkdir cache_dir && 24 python3 /fidlemore/model_wine_lightning/wine_quality_train_eval.py -dataset_filepath ${dataset_csv} &&
27 export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) &&
28 mkdir mpl_dir &&
29 export MPLCONFIGDIR=\$(realpath -s mpl_dir) &&
30 python3 $__tool_directory__/toto_wine_quality_train_eval.py -dataset_filepath ${dataset_csv} &&
31 cp OUTPUTS/model.ckpt ${model_ckpt} && 25 cp OUTPUTS/model.ckpt ${model_ckpt} &&
32 cp OUTPUTS/norm_config.json ${norm_config_json} && 26 cp OUTPUTS/norm_config.json ${norm_config_json} &&
33 cp OUTPUTS/report.json ${report_json}" 27 cp OUTPUTS/report.json ${report_json}"
34 ]]> 28 ]]>
35 </command> 29 </command>