Mercurial > repos > siwaa > wine_quality_train_eval
diff wine_quality_train_eval.xml @ 19:a9b2e3ba898b draft
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit c595a7b4b556ab642ecf0396957f2959139dc4ab-dirty
| author | siwaa |
|---|---|
| date | Mon, 09 Dec 2024 11:06:43 +0000 |
| parents | 8916f75916b6 |
| children | 083671dfbef9 |
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--- a/wine_quality_train_eval.xml Fri Dec 06 19:19:52 2024 +0000 +++ b/wine_quality_train_eval.xml Mon Dec 09 11:06:43 2024 +0000 @@ -6,28 +6,22 @@ <requirements> <!-- singularity --> - <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:1906137478520a9f71a4d8996c0a8827f27aed16</container> + <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:c595a7b4b556ab642ecf0396957f2959139dc4ab</container> <!-- image locale <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container --> </requirements> - <environment_variables> - </environment_variables> <command detect_errors="aggressive"> <![CDATA[ bash -e -c "source /fidle-tp/fidle-env/bin/activate && mkdir datasets-fidle && export FIDLE_DATASETS_DIR=\$(realpath -s datasets-fidle) && - mkdir ipython_dir && - export IPYTHONDIR=\$(realpath -s ipython_dir) && - ipython profile create default && - mkdir cache_dir && - export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) && - mkdir mpl_dir && - export MPLCONFIGDIR=\$(realpath -s mpl_dir) && - python3 $__tool_directory__/toto_wine_quality_train_eval.py -dataset_filepath ${dataset_csv} && + mkdir datasets-fidle/WineQuality && + mkdir datasets-fidle/WineQuality/origine && + cp /fidle-tp/datasets-fidle/WineQuality/origine/winequality-red.csv datasets-fidle/WineQuality/origine/. && + python3 /fidlemore/model_wine_lightning/wine_quality_train_eval.py -dataset_filepath ${dataset_csv} && cp OUTPUTS/model.ckpt ${model_ckpt} && cp OUTPUTS/norm_config.json ${norm_config_json} && cp OUTPUTS/report.json ${report_json}"