Mercurial > repos > siwaa > wine_quality_train_eval

comparison wine_quality_train_eval.xml @ 3:ce2d614cac69 draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit e7c4e447552083db7eaecbdf139a7c359fe9becc-dirty
author siwaa
date Thu, 05 Dec 2024 09:24:13 +0000
parents 1f8d2f4605b3
children d490c7a4c63b
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2:1f8d2f4605b3 3:ce2d614cac69
13 13
14 </requirements> 14 </requirements>
15 15
16 <environment_variables> 16 <environment_variables>
17 <environment_variable name="FIDLE_DATASETS_DIR">/fidle-tp/datasets-fidle</environment_variable> 17 <environment_variable name="FIDLE_DATASETS_DIR">/fidle-tp/datasets-fidle</environment_variable>
18 <environment_variable name="TRANSFORMERS_CACHE">/fidle-tp/fidle-env/cache_dir</environment_variable>
19 <environment_variable name="MPLCONFIGDIR">/fidle-tp/fidle-env/mpl_dir</environment_variable>
20 </environment_variables> 18 </environment_variables>
21 <command detect_errors="aggressive"> 19 <command detect_errors="aggressive">
22 <![CDATA[ 20 <![CDATA[
23 . /fidle-tp/fidle-env/bin/activate; 21 . /fidle-tp/fidle-env/bin/activate;
24 mkdir /fidle-tp/fidle-env/cache_dir; export TRANSFORMERS_CACHE=/fidle-tp/fidle-env/cache_dir; 22 bash -e -c "mkdir cache_dir &&
25 mkdir /fidle-tp/fidle-env/mpl_dir; export MPLCONFIGDIR=/fidle-tp/fidle-env/mpl_dir; 23 mkdir mpl_dir &&
26 /bin/bash -c "python3 /fidlemore/model_wine_lightning/wine_quality_train_eval.py -dataset_filepath ${dataset_csv}"; 24 export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) &&
27 cp OUTPUTS/model.ckpt ${model_ckpt}; 25 export MPLCONFIGDIR=\$(realpath -s mpl_dir) &&
28 cp OUTPUTS/norm_config.json ${norm_config_json}; 26 python3 /fidlemore/model_wine_lightning/wine_quality_train_eval.py -dataset_filepath ${dataset_csv} &&
29 cp OUTPUTS/report.json ${report_json}; 27 cp OUTPUTS/model.ckpt ${model_ckpt} &&
28 cp OUTPUTS/norm_config.json ${norm_config_json} &&
29 cp OUTPUTS/report.json ${report_json}"
30 ]]> 30 ]]>
31 </command> 31 </command>
32 32
33 <inputs> 33 <inputs>
34 <param name="dataset_csv" optional="true" type="data" format="csv" 34 <param name="dataset_csv" optional="true" type="data" format="csv"