Mercurial > repos > siwaa > wine_quality_train_eval

changeset 3:ce2d614cac69 draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit e7c4e447552083db7eaecbdf139a7c359fe9becc-dirty
author siwaa
date Thu, 05 Dec 2024 09:24:13 +0000
parents 1f8d2f4605b3
children d490c7a4c63b
files wine_quality_train_eval.xml
diffstat 1 files changed, 8 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/wine_quality_train_eval.xml	Wed Dec 04 18:43:52 2024 +0000
+++ b/wine_quality_train_eval.xml	Thu Dec 05 09:24:13 2024 +0000
@@ -15,18 +15,18 @@
 
   <environment_variables>
     <environment_variable name="FIDLE_DATASETS_DIR">/fidle-tp/datasets-fidle</environment_variable>
-    <environment_variable name="TRANSFORMERS_CACHE">/fidle-tp/fidle-env/cache_dir</environment_variable>
-    <environment_variable name="MPLCONFIGDIR">/fidle-tp/fidle-env/mpl_dir</environment_variable>
   </environment_variables>
   <command detect_errors="aggressive">
     <![CDATA[
     . /fidle-tp/fidle-env/bin/activate;
-    mkdir /fidle-tp/fidle-env/cache_dir; export TRANSFORMERS_CACHE=/fidle-tp/fidle-env/cache_dir;
-    mkdir /fidle-tp/fidle-env/mpl_dir; export MPLCONFIGDIR=/fidle-tp/fidle-env/mpl_dir;
-    /bin/bash -c "python3 /fidlemore/model_wine_lightning/wine_quality_train_eval.py -dataset_filepath ${dataset_csv}";
-    cp OUTPUTS/model.ckpt ${model_ckpt};
-    cp OUTPUTS/norm_config.json ${norm_config_json};
-    cp OUTPUTS/report.json ${report_json};
+    bash -e -c "mkdir cache_dir &&
+    mkdir mpl_dir &&
+    export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) &&
+    export MPLCONFIGDIR=\$(realpath -s mpl_dir) &&
+    python3 /fidlemore/model_wine_lightning/wine_quality_train_eval.py -dataset_filepath ${dataset_csv} &&
+    cp OUTPUTS/model.ckpt ${model_ckpt} &&
+    cp OUTPUTS/norm_config.json ${norm_config_json} &&
+    cp OUTPUTS/report.json ${report_json}"
     ]]>
   </command>